Publication date
April 2021
DOIAbstract
enhance metadata in/out with JSON eq_archive instead of eq_zip to avoid confusion use SHA256 checksum and use CMake for checksu
enhance metadata in/out with JSON eq_archive instead of eq_zip to avoid confusion use SHA256 checksum and use CMake for checksu
Gemini 3D simulation reference data https://www.github.com/gemini3d/gemini v3.1.0 compressed HDF
RNA-seq count matrices and sample metadata *.tsv - sample metadata files *_merged_counts_pseudo.ts...
added numerous unit and integration tests handle paths more reliably overhaul HDF5 and NetCDF4 to be...
NOTE: now requires eq_zip to be specified in config.nml if eq_url is being used to download and extr...
Numerous improvements to reliability, including: use JSON for config URLs instead of INI uniform se...
enhance reproducability by embedding Git revision and version info in executable error quickly if ex...
Files used for self-verification of GEMINI program. https://github.com/mattzett/gemin
CMake: enhancements to make CDash and console output prettier Docs: split Readme into several linked...
this does require you to git submodule update --init if you already have mat_gemin
allow CMake to reconfigure if first configure fails, by deleting build directory redownload data zip...
Added .zenodo.json file to allow automatic buildup for Zenodo metadata for this repositor
Oncology-specific annotation files for use with GEMINI - with (upcoming) special support through Gal...
improve quality of .run frontends with functionalization and reuse gemini3d.run magcalc.ru
Files used for self-verification of GEMINI program. https://github.com/gemini3d/gemini v4.1.0 upda...
Added a codemeta-harvest.json file so that SHEBANQ is well represented in the software registry of C...
Gemini 3D simulation reference data https://www.github.com/gemini3d/gemini v3.1.0 compressed HDF
RNA-seq count matrices and sample metadata *.tsv - sample metadata files *_merged_counts_pseudo.ts...
added numerous unit and integration tests handle paths more reliably overhaul HDF5 and NetCDF4 to be...
NOTE: now requires eq_zip to be specified in config.nml if eq_url is being used to download and extr...
Numerous improvements to reliability, including: use JSON for config URLs instead of INI uniform se...
enhance reproducability by embedding Git revision and version info in executable error quickly if ex...
Files used for self-verification of GEMINI program. https://github.com/mattzett/gemin
CMake: enhancements to make CDash and console output prettier Docs: split Readme into several linked...
this does require you to git submodule update --init if you already have mat_gemin
allow CMake to reconfigure if first configure fails, by deleting build directory redownload data zip...
Added .zenodo.json file to allow automatic buildup for Zenodo metadata for this repositor
Oncology-specific annotation files for use with GEMINI - with (upcoming) special support through Gal...
improve quality of .run frontends with functionalization and reuse gemini3d.run magcalc.ru
Files used for self-verification of GEMINI program. https://github.com/gemini3d/gemini v4.1.0 upda...
Added a codemeta-harvest.json file so that SHEBANQ is well represented in the software registry of C...
Gemini 3D simulation reference data https://www.github.com/gemini3d/gemini v3.1.0 compressed HDF
RNA-seq count matrices and sample metadata *.tsv - sample metadata files *_merged_counts_pseudo.ts...
added numerous unit and integration tests handle paths more reliably overhaul HDF5 and NetCDF4 to be...
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