New features and bug fixes. Switched models from being stored with MapDB to RocksDB. Added a disk based model for acronyms. Changed defaults from using in-memory models to using in-disk models. BioMedICUS will now run on less than 2gb of heap size. Added a numbers detector and a units of measurement detector. More-comprehensive models are available from http://athena.ahc.umn.edu/biomedicus-downloads/ for verified UMLS licensees
v0.9 has the following updates and changes (July 28, 2020) gene expression raw count normalization...
MetaPhlAn 3.1 represents a moderate update to the bioBakery 3 software and databases. This update is...
Added Added new flag --removecontam to the report command to remove contaminants from the reports A...
New features and bug fixes. Switched models from being stored with MapDB to RocksDB. Added a disk b...
1.8.2 hotfix: Logs file names when the pipeline crashes New features and bug fixes. Switched models...
1.8.3 hotfix: Fixed an issue where the number normalizer would cause the pipeline to crash, fixed so...
The BioMedical Information Collection and Understanding System (BioMedICUS) is a system for large-sc...
The BioMedical Information Collection and Understanding System (BioMedICUS) is a system for large-sc...
Improvements to acronym detection. Improvements to tokenization pipeline. Improvements to concept de...
Beta Social History module Bug fixes and improvements Architecture and framework improvements Type-s...
Small bugfix release because a label property "type" broke UIMA's JCasGen. Install instructions are ...
What's Changed Reimplement prefix map generation by @cthoyt in https://github.com/biopragmatics/bio...
Release v1.2 Updated the versions of the installed tools in the image, along with upgrading the Ubu...
What's Changed Add supported python versions badge by @SagiPolaczek in https://github.com/BiomedSci...
What's Changed add slot usage required instead of broad slot required by @sierra-moxon in https://g...
v0.9 has the following updates and changes (July 28, 2020) gene expression raw count normalization...
MetaPhlAn 3.1 represents a moderate update to the bioBakery 3 software and databases. This update is...
Added Added new flag --removecontam to the report command to remove contaminants from the reports A...
New features and bug fixes. Switched models from being stored with MapDB to RocksDB. Added a disk b...
1.8.2 hotfix: Logs file names when the pipeline crashes New features and bug fixes. Switched models...
1.8.3 hotfix: Fixed an issue where the number normalizer would cause the pipeline to crash, fixed so...
The BioMedical Information Collection and Understanding System (BioMedICUS) is a system for large-sc...
The BioMedical Information Collection and Understanding System (BioMedICUS) is a system for large-sc...
Improvements to acronym detection. Improvements to tokenization pipeline. Improvements to concept de...
Beta Social History module Bug fixes and improvements Architecture and framework improvements Type-s...
Small bugfix release because a label property "type" broke UIMA's JCasGen. Install instructions are ...
What's Changed Reimplement prefix map generation by @cthoyt in https://github.com/biopragmatics/bio...
Release v1.2 Updated the versions of the installed tools in the image, along with upgrading the Ubu...
What's Changed Add supported python versions badge by @SagiPolaczek in https://github.com/BiomedSci...
What's Changed add slot usage required instead of broad slot required by @sierra-moxon in https://g...
v0.9 has the following updates and changes (July 28, 2020) gene expression raw count normalization...
MetaPhlAn 3.1 represents a moderate update to the bioBakery 3 software and databases. This update is...
Added Added new flag --removecontam to the report command to remove contaminants from the reports A...
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