We present molecular dynamics (MD) trajectories of water solutions of eighth zwitterionic amino-acids (L- form) glycine (GLY), alanine (ALA), proline (PRO), threonine (THR), leucine (LEU), glutamine (GLN), histidine (HIS) and tyrosine (TYR) using various force field (OPLS-AA, Amber99ff-SB, GROMOS96 54a7, CHARMM19) and water model (SPC/E, TIP3P) combinations. Additionally, we present OPLS-AA molecular dynamics (MD) trajectories for alanine (ALA), leucine (LEU), glutamine (GLN), and tyrosine (TYR) varying the values of major force field parameters: charge on all amino acid atoms, bond length (all amino acid bonds), Lennard-Jones epsilon parameter and stiffness of bond angles. Our data enable to uncover sensitivity of molecular dynamics derive...
Recent molecular dynamics (MD) simulations of proteins have suggested that common force fields overe...
AbstractIn this article we provide a data package containing the topology files and parameters compa...
Abstract: Biological function of biomolecules is accompanied by a wide range of motional behavior. A...
Molecular dynamics (MD) trajectories of water solutions of eight zwitterionic amino-acids (L- form) ...
AbstractWe present extensive all-atom Molecular Dynamics (MD) simulation data of the twenty encoded ...
Molecular Simulation Laboratory, Department of Chemistry, National Institute of Technology, Rourkela...
We present extensive all-atom Molecular Dynamics (MD) simulation data of the twenty encoded amino ac...
Although it is now commonly accepted that the highly crowded conditions encountered inside biologica...
Molecular dynamics (MD) simulations studies have been performed on the aqueous solvation of the dipe...
We compare the conformational distributions of Ace-Ala-Nme and Ace-Gly-Nme sampled in long simulatio...
Thermodynamic and kinetic properties are of critical importance for the applicability of computation...
All-atom molecular mechanics (MM) force field parameters are developed for the backbone of acyclic -...
This dataset contains molecular dynamics (MD) trajectories used for preparation of the following man...
The force fields used in computer simulations play an important role in describing a particular syst...
Chuan Tian presented his work on Amber ff19SB force field at the Chodera lab at MSKCC on Sep 12, 201...
Recent molecular dynamics (MD) simulations of proteins have suggested that common force fields overe...
AbstractIn this article we provide a data package containing the topology files and parameters compa...
Abstract: Biological function of biomolecules is accompanied by a wide range of motional behavior. A...
Molecular dynamics (MD) trajectories of water solutions of eight zwitterionic amino-acids (L- form) ...
AbstractWe present extensive all-atom Molecular Dynamics (MD) simulation data of the twenty encoded ...
Molecular Simulation Laboratory, Department of Chemistry, National Institute of Technology, Rourkela...
We present extensive all-atom Molecular Dynamics (MD) simulation data of the twenty encoded amino ac...
Although it is now commonly accepted that the highly crowded conditions encountered inside biologica...
Molecular dynamics (MD) simulations studies have been performed on the aqueous solvation of the dipe...
We compare the conformational distributions of Ace-Ala-Nme and Ace-Gly-Nme sampled in long simulatio...
Thermodynamic and kinetic properties are of critical importance for the applicability of computation...
All-atom molecular mechanics (MM) force field parameters are developed for the backbone of acyclic -...
This dataset contains molecular dynamics (MD) trajectories used for preparation of the following man...
The force fields used in computer simulations play an important role in describing a particular syst...
Chuan Tian presented his work on Amber ff19SB force field at the Chodera lab at MSKCC on Sep 12, 201...
Recent molecular dynamics (MD) simulations of proteins have suggested that common force fields overe...
AbstractIn this article we provide a data package containing the topology files and parameters compa...
Abstract: Biological function of biomolecules is accompanied by a wide range of motional behavior. A...