Simulations of a water–air interface. There are ~20000 water molecules with various concentrations of NaCl or CaCl_2 in a simulation box of 12*12*22 nm^3. The SPCE water and the ions by Dang et al. are used. The numbering in file names corresponds to the different concentrations, and data for a pure water–air interface "NOION" is also provided. GROMACS-compatible inputs are provided: simulation parameters (md.mdp), topologies (top), and index (ndx) files. Initial structure can be extracted from the tpr file using gmx editconf. The run input (tpr) is provided, as are the outputs: energy file (edr), trajectory (xtc), and final structure (gro). Surface tensions can be extracted by gmx energy. These values are reported in DOI: [ADD]. Data for...
Classical molecular dynamics simulations of various mixtures of POPC:POPS lipid bilayers in water so...
In our previous study [Planková et al., EPJWeb. Conf. 92, 02071 (2015)], several molecular simulatio...
Simulation of a POPG bilayer of 500 lipids (250 per leaflet) is simulated for 500 ns using Gromacs v...
Simulations of a water–air interface. There are ~20000 water molecules with various concentrations o...
Simulations of a water–air interface. There are ~20000 water molecules with various concentrations o...
Surface tensions for liquid-vapor (lv), solid-liquid (sl), and solid-vapor (sv) interfaces are calcu...
flat POPC bilayer simulations at various NaCl and CaCl2 concentration modelled with Lipid14 force f...
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl a...
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl, ...
Simulations of a POPC bilayer with 940 mM of NaCl. The fifth from the set of 6 simulations. The g...
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl a...
An in-depth understanding of a wide range of physical, chemical, atmospheric and biological processe...
A combination of experimental, molecular dynamics, and kinetics modeling studies is applied to a sys...
The dataset contains the configuration files and the results of molecular simulations of aqueous gly...
GROMACS files and CP2K files, both input and output, required to reproduce the figures of the public...
Classical molecular dynamics simulations of various mixtures of POPC:POPS lipid bilayers in water so...
In our previous study [Planková et al., EPJWeb. Conf. 92, 02071 (2015)], several molecular simulatio...
Simulation of a POPG bilayer of 500 lipids (250 per leaflet) is simulated for 500 ns using Gromacs v...
Simulations of a water–air interface. There are ~20000 water molecules with various concentrations o...
Simulations of a water–air interface. There are ~20000 water molecules with various concentrations o...
Surface tensions for liquid-vapor (lv), solid-liquid (sl), and solid-vapor (sv) interfaces are calcu...
flat POPC bilayer simulations at various NaCl and CaCl2 concentration modelled with Lipid14 force f...
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl a...
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl, ...
Simulations of a POPC bilayer with 940 mM of NaCl. The fifth from the set of 6 simulations. The g...
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl a...
An in-depth understanding of a wide range of physical, chemical, atmospheric and biological processe...
A combination of experimental, molecular dynamics, and kinetics modeling studies is applied to a sys...
The dataset contains the configuration files and the results of molecular simulations of aqueous gly...
GROMACS files and CP2K files, both input and output, required to reproduce the figures of the public...
Classical molecular dynamics simulations of various mixtures of POPC:POPS lipid bilayers in water so...
In our previous study [Planková et al., EPJWeb. Conf. 92, 02071 (2015)], several molecular simulatio...
Simulation of a POPG bilayer of 500 lipids (250 per leaflet) is simulated for 500 ns using Gromacs v...