SSUsearch reference dataset

This is the reference databases for SSUsearch, including the files below. If you want to updated version of SILVA, please look into the "readme" file. Ali_template.ssu.silva.fasta: alignment template for mothur.align Copy_db_cc.ssu.copyrighter.txt: SSU rRNA gene copy DB # in copyrighter Gene_db_cc.ssu.greengene_rep.fasta: SSU rRNA gene referecne DB in Greengene Gene_db.ssu.silva_108_rep.fasta: SSU rRNA gene ref DB in SILVA Gene_model_org.ssu.fasta: E.coli SSU rRNA gene sequence, 16s_ecoli_J01695. Gene_tax_cc.ssu.greengene_rep.tax: SSU rRNA gene taxon ref DB in Greengene Gene_tax.ssu.silva_108_rep_family.tax: SSU rRNA gene taxon ref DB in SILVA Hmm.ssu.hmm: 2 hmms for bac + arc and euk Please cite the original paper: Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes Jiarong Guo, James R. Cole, Qingpeng Zhang, C. Titus Brown, James M. Tiedje Appl. Environ. Microbiol. Dec 2015, 82 (1) 157-166; DOI: 10.1128/AEM.02772-1