We fit 500 models with 500 subsets of 25 randomly selected features from the uncorrelated 4800 features set. Test (top panel) and train (bottom) AUC values for the 500 models are shown. In green the AUC values for test and train obtained with the best performing models of the no population structure control (nPSC) pipeline, and in red the test and train values of the best performing models with population structure control (PSC). Randomly selected features can show high accuracy most likely due to the correlation of AET outcome and the phylogeny. (TIF)</p
(A) shows the AUC (95% confidence interval) of the p50 model tested on the same subset from which it...
<p>ROCR of different models are plotted. The legend lists the number of features, AUC and sensitivit...
<p>We also compared here two combinations of training – candidate sets (i.e. the two figures on the ...
<p>The response variable used was number of fledglings. Data set indicates whether the data refer to...
A, B, C, and D: Each colored line indicates a result from a single random training-test set split, a...
<p>AUC<sup>a</sup>: area under the receiver operating characteristic curves.</p><p>SEER<sup>b</sup>:...
<p>Correlations between prediction performances of methods, measured as the average AUC over phenoty...
<p>The best performance for each network is emphasized in bold. Each number is obtained by averaging...
Classic regression approaches with forward and/or backward stepwise selection yield the highest AUC....
<p>Random Forest (RF) in association with Backward Selection (BS) and 69 features (left), with Forwa...
<p>Each row represents a clinical phenotype and consists of 130 cells, each of which represents a Pe...
We compute the area under the curve (AUC) for each model and each cohort, where a perfect classifier...
<p>SNPs were divided into 6 models based on MAF or haplotype. AUC (A) and TPR (B) were calculated us...
<p>Each row represents a phenotype predicted with AUC>0.7 by genome sequence (<a href="http://www.pl...
<p>Results are showed on simple and complex traits through the 10 replicates of the simulation. Figu...
(A) shows the AUC (95% confidence interval) of the p50 model tested on the same subset from which it...
<p>ROCR of different models are plotted. The legend lists the number of features, AUC and sensitivit...
<p>We also compared here two combinations of training – candidate sets (i.e. the two figures on the ...
<p>The response variable used was number of fledglings. Data set indicates whether the data refer to...
A, B, C, and D: Each colored line indicates a result from a single random training-test set split, a...
<p>AUC<sup>a</sup>: area under the receiver operating characteristic curves.</p><p>SEER<sup>b</sup>:...
<p>Correlations between prediction performances of methods, measured as the average AUC over phenoty...
<p>The best performance for each network is emphasized in bold. Each number is obtained by averaging...
Classic regression approaches with forward and/or backward stepwise selection yield the highest AUC....
<p>Random Forest (RF) in association with Backward Selection (BS) and 69 features (left), with Forwa...
<p>Each row represents a clinical phenotype and consists of 130 cells, each of which represents a Pe...
We compute the area under the curve (AUC) for each model and each cohort, where a perfect classifier...
<p>SNPs were divided into 6 models based on MAF or haplotype. AUC (A) and TPR (B) were calculated us...
<p>Each row represents a phenotype predicted with AUC>0.7 by genome sequence (<a href="http://www.pl...
<p>Results are showed on simple and complex traits through the 10 replicates of the simulation. Figu...
(A) shows the AUC (95% confidence interval) of the p50 model tested on the same subset from which it...
<p>ROCR of different models are plotted. The legend lists the number of features, AUC and sensitivit...
<p>We also compared here two combinations of training – candidate sets (i.e. the two figures on the ...