Phylogenetic analyses of CHIKV in the Americas.
- Bernardo Gutierrez (6453725)
- Darlan da Silva Candido (6433859)
- Sumali Bajaj (8971151)
- Abril Paulina Rodriguez Maldonado (16943078)
- Fabiola Garces Ayala (16943081)
- María de la Luz Torre Rodriguez (16943084)
- Adnan Araiza Rodriguez (16943087)
- Claudia Wong Arámbula (16943090)
- Ernesto Ramírez González (16943093)
- Irma López Martínez (8555781)
- José Alberto Díaz-Quiñónez (16943096)
- Mauricio Vázquez Pichardo (16943099)
- Sarah C. Hill (3311418)
- Julien Thézé (6433850)
- Nuno R. Faria (8098247)
- Oliver G. Pybus (8098271)
- Lorena Preciado-Llanes (6756047)
- Arturo Reyes-Sandoval (174899)
- Moritz U. G. Kraemer (3290625)
- Marina Escalera-Zamudio (606283)
Publication date
September 2023
DOIAbstract
ML phylogenetic tree for CHIKV inferred from the complete genome sequences from the Americas included in our analysis, denoting an ‘American’ lineage (left panel). Tree tips are coloured according to the region/country of collection, whilst nodes are coloured according to branch support values (SH-aLRT). To the right, a time-calibrated MCC tree is displayed, showing a well-defined CCNA clade within the ‘American’ lineage. Tips and branches are coloured by the location of origin and circulation, inferred through a DTA phylogeographic analysis (see Methods section, main text). (PNG)</p
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