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Additional analysis outputs, additional maps, and alternative model results.

Maggie S. J. McCarter (16954781)
Stella Self (8790665)
Kyndall C. Dye-Braumuller (16954784)
Christopher Lee (11627)
Huixuan Li (14096064)
Melissa S. Nolan (10220855)

Publication date

September 2023

DOI

10.1371/journal.pone.0290873.s001

Abstract

This supplemental file is comprised of four distinct appendices that provide detailed model parameters, data availability sources, additional figures, and results from an alternative model selection procedure. (PDF)</p

Extracted data

Related items

Appendix D. Description of the model selection procedure and model output for the full and minimum adequate models.

Susanne Wurst (282824)
Nina Kaiser (2929401)
Susann Nitzsche (2929404)
Josephine Haase (379830)
Harald Auge (777458)
Matthias C. Rillig (130475)
Jeff R. Powell (168445)

August 2016

Description of the model selection procedure and model output for the full and minimum adequate mode...

Supplemental methods and results.

Karl M. F. Emmert-Fees (13106805)
Ben Amies-Cull (15183210)
Nina Wawro (8748657)
Jakob Linseisen (123573)
Matthias Staudigel (17427632)
Annette Peters (62601)
Linda J. Cobiac (9514861)
Martin O’Flaherty (391936)
Peter Scarborough (329722)
Chris Kypridemos (719751)
Michael Laxy (3224892)

November 2023

Detailed methodological description of the applied simulation models, including all preparatory anal...

Supplementary Appendices and Tables

McCann, Jamie
Jang, Tae-Soo
Macas, Jiri
Schneeweiss, Gerald M.
Matzke, Nicholas J.
Novak, Petr
Stuessy, Tod F.
Villaseñor, Jose L.
Weiss-Schneeweiss, Hanna

March 2018

The PDF file containing the supplementary appendices (S1-S4) and supplementary tables (S1-S7) as cit...

Supplementary information.

Jolan De Boeck (11261995)
Jan Rombouts (5007665)
Lendert Gelens (451747)

August 2021

This file contains additional mathematical analysis of the models and the supplemental figures liste...

The supplementary document.

Louis Yat Hin Chan (14493190)
Gunnar Rø (781268)
Jørgen Eriksson Midtbø (14493196)
Francesco Di Ruscio (4167493)
Sara Sofie Viksmoen Watle (17879852)
Lene Kristine Juvet (11617438)
Jasper Littmann (17879855)
Preben Aavitsland (63645)
Karin Maria Nygård (12123874)
Are Stuwitz Berg (17879858)
Geir Bukholm (80029)
Anja Bråthen Kristoffersen (9511116)
Kenth Engø-Monsen (3629602)
Solveig Engebretsen (6433781)
David Swanson (592371)
Alfonso Diz-Lois Palomares (14493184)
Jonas Christoffer Lindstrøm (4714431)
Arnoldo Frigessi (11292)
Birgitte Freiesleben de Blasio (8927417)

January 2024

This includes more detailed descriptions of the models and additional results. (PDF)</p

Supplementary figures, table and parameterization.

Kirsten Henderson (5118332)
Michel Loreau (60807)

August 2018

Description of parameter values, in addition to sources and data calibration. Further analyses are p...

Supplementary Information file.

Michelle Przedborski (10647203)
David Sharon (418121)
Severine Cathelin (13783027)
Steven Chan (11010939)
Mohammad Kohandel (192746)

September 2022

The file contains Appendices A, B, and C, which include all of the equations for the mathematical mo...

Supplementary Methods and Tables.

Samuel H. Church (8147109)
Catriona Munro (3272664)
Casey W. Dunn (9975681)
Cassandra G. Extavour (8147112)

January 2023

Additional figures and text describing analysis methods, as well as tables of sequencing statistics ...

Mathematical analysis of the model.

Peter Czuppon (8029874)
Troy Day (361864)
Florence Débarre (265532)
François Blanquart (3191950)

August 2023

The supplement contains details of the mathematical derivation of the main results and additional si...

Supplementary text, figures and extended modeling.

Joao Pinheiro Neto (14192992)
F. Paul Spitzner (12494500)
Viola Priesemann (383305)

November 2022

We provide additional computations, numerical simulations, and an extended discussion of the model a...

Supplementary text.

Kevin Hoefman (4395505)
Aaron Bramson (4395493)
Koen Schoors (4395496)
Jan Ryckebusch (4395508)

November 2018

The full dataset used and additional details of our analysis results (including Fig S1 and reference...

Additional modelling methods and results.

Dramane Kaba (248358)
Mathurin Koffi (301501)
Lingué Kouakou (4520932)
Emmanuel Kouassi N’Gouan (9375278)
Vincent Djohan (767048)
Fabrice Courtin (294181)
Martial Kassi N’Djetchi (4520929)
Bamoro Coulibaly (4520935)
Guy Pacôme Adingra (16715656)
Djakaridja Berté (11037258)
Bi Tra Dieudonné Ta (16715659)
Minayégninrin Koné (9375275)
Barkissa Mélika Traoré (11868990)
Samuel A. Sutherland (16699356)
Ronald E. Crump (10053205)
Ching-I Huang (391259)
Jason Madan (3471026)
Paul R. Bessell (6760313)
Antoine Barreaux (5676923)
Philippe Solano (211311)
Emily H. Crowley (15065424)
Kat S. Rock (2633992)
Vincent Jamonneau (256809)

July 2023

Details on the model definition, parameter inputs, fitting methodology, posterior parameter distribu...

Supplementary Text

Leonardo de Oliveira Martins (377007)
David Posada (19469)

November 2016

This is the supplementary text describing additional analyses and figures. All analyses reported her...

Supplementary methods.

Joseph D. Valencia (17138419)
David A. Hendrix (11992487)

October 2023

Additional methodological details and results for hyperparameter tuning, training, and interpretatio...

Supplementary Online Material

Siavash Mirarab (3259020)
Md Shamsuzzoha Bayzid (3259023)
Tandy Warnow (177698)

October 2016

This files includes supplementary material, including extra set of results, the model species trees ...

Appendix D. Description of the model selection procedure and model output for the full and minimum adequate models.

Susanne Wurst (282824)
Nina Kaiser (2929401)
Susann Nitzsche (2929404)
Josephine Haase (379830)
Harald Auge (777458)
Matthias C. Rillig (130475)
Jeff R. Powell (168445)

August 2016

Description of the model selection procedure and model output for the full and minimum adequate mode...

Supplemental methods and results.

Karl M. F. Emmert-Fees (13106805)
Ben Amies-Cull (15183210)
Nina Wawro (8748657)
Jakob Linseisen (123573)
Matthias Staudigel (17427632)
Annette Peters (62601)
Linda J. Cobiac (9514861)
Martin O’Flaherty (391936)
Peter Scarborough (329722)
Chris Kypridemos (719751)
Michael Laxy (3224892)

November 2023

Detailed methodological description of the applied simulation models, including all preparatory anal...

Supplementary Appendices and Tables

McCann, Jamie
Jang, Tae-Soo
Macas, Jiri
Schneeweiss, Gerald M.
Matzke, Nicholas J.
Novak, Petr
Stuessy, Tod F.
Villaseñor, Jose L.
Weiss-Schneeweiss, Hanna

March 2018

The PDF file containing the supplementary appendices (S1-S4) and supplementary tables (S1-S7) as cit...

Supplementary information.

Jolan De Boeck (11261995)
Jan Rombouts (5007665)
Lendert Gelens (451747)

August 2021

This file contains additional mathematical analysis of the models and the supplemental figures liste...

The supplementary document.

Louis Yat Hin Chan (14493190)
Gunnar Rø (781268)
Jørgen Eriksson Midtbø (14493196)
Francesco Di Ruscio (4167493)
Sara Sofie Viksmoen Watle (17879852)
Lene Kristine Juvet (11617438)
Jasper Littmann (17879855)
Preben Aavitsland (63645)
Karin Maria Nygård (12123874)
Are Stuwitz Berg (17879858)
Geir Bukholm (80029)
Anja Bråthen Kristoffersen (9511116)
Kenth Engø-Monsen (3629602)
Solveig Engebretsen (6433781)
David Swanson (592371)
Alfonso Diz-Lois Palomares (14493184)
Jonas Christoffer Lindstrøm (4714431)
Arnoldo Frigessi (11292)
Birgitte Freiesleben de Blasio (8927417)

January 2024

This includes more detailed descriptions of the models and additional results. (PDF)</p

Supplementary figures, table and parameterization.

Kirsten Henderson (5118332)
Michel Loreau (60807)

August 2018

Description of parameter values, in addition to sources and data calibration. Further analyses are p...

Supplementary Information file.

Michelle Przedborski (10647203)
David Sharon (418121)
Severine Cathelin (13783027)
Steven Chan (11010939)
Mohammad Kohandel (192746)

September 2022

The file contains Appendices A, B, and C, which include all of the equations for the mathematical mo...

Supplementary Methods and Tables.

Samuel H. Church (8147109)
Catriona Munro (3272664)
Casey W. Dunn (9975681)
Cassandra G. Extavour (8147112)

January 2023

Additional figures and text describing analysis methods, as well as tables of sequencing statistics ...

Mathematical analysis of the model.

Peter Czuppon (8029874)
Troy Day (361864)
Florence Débarre (265532)
François Blanquart (3191950)

August 2023

The supplement contains details of the mathematical derivation of the main results and additional si...

Supplementary text, figures and extended modeling.

Joao Pinheiro Neto (14192992)
F. Paul Spitzner (12494500)
Viola Priesemann (383305)

November 2022

We provide additional computations, numerical simulations, and an extended discussion of the model a...

Supplementary text.

Kevin Hoefman (4395505)
Aaron Bramson (4395493)
Koen Schoors (4395496)
Jan Ryckebusch (4395508)

November 2018

The full dataset used and additional details of our analysis results (including Fig S1 and reference...

Additional modelling methods and results.

Dramane Kaba (248358)
Mathurin Koffi (301501)
Lingué Kouakou (4520932)
Emmanuel Kouassi N’Gouan (9375278)
Vincent Djohan (767048)
Fabrice Courtin (294181)
Martial Kassi N’Djetchi (4520929)
Bamoro Coulibaly (4520935)
Guy Pacôme Adingra (16715656)
Djakaridja Berté (11037258)
Bi Tra Dieudonné Ta (16715659)
Minayégninrin Koné (9375275)
Barkissa Mélika Traoré (11868990)
Samuel A. Sutherland (16699356)
Ronald E. Crump (10053205)
Ching-I Huang (391259)
Jason Madan (3471026)
Paul R. Bessell (6760313)
Antoine Barreaux (5676923)
Philippe Solano (211311)
Emily H. Crowley (15065424)
Kat S. Rock (2633992)
Vincent Jamonneau (256809)

July 2023

Details on the model definition, parameter inputs, fitting methodology, posterior parameter distribu...

Supplementary Text

Leonardo de Oliveira Martins (377007)
David Posada (19469)

November 2016

This is the supplementary text describing additional analyses and figures. All analyses reported her...

Supplementary methods.

Joseph D. Valencia (17138419)
David A. Hendrix (11992487)

October 2023

Additional methodological details and results for hyperparameter tuning, training, and interpretatio...

Supplementary Online Material

Siavash Mirarab (3259020)
Md Shamsuzzoha Bayzid (3259023)
Tandy Warnow (177698)

October 2016

This files includes supplementary material, including extra set of results, the model species trees ...

Appendix D. Description of the model selection procedure and model output for the full and minimum adequate models.

Susanne Wurst (282824)
Nina Kaiser (2929401)
Susann Nitzsche (2929404)
Josephine Haase (379830)
Harald Auge (777458)
Matthias C. Rillig (130475)
Jeff R. Powell (168445)

August 2016

Description of the model selection procedure and model output for the full and minimum adequate mode...

Supplemental methods and results.

Karl M. F. Emmert-Fees (13106805)
Ben Amies-Cull (15183210)
Nina Wawro (8748657)
Jakob Linseisen (123573)
Matthias Staudigel (17427632)
Annette Peters (62601)
Linda J. Cobiac (9514861)
Martin O’Flaherty (391936)
Peter Scarborough (329722)
Chris Kypridemos (719751)
Michael Laxy (3224892)

November 2023

Detailed methodological description of the applied simulation models, including all preparatory anal...

Supplementary Appendices and Tables

McCann, Jamie
Jang, Tae-Soo
Macas, Jiri
Schneeweiss, Gerald M.
Matzke, Nicholas J.
Novak, Petr
Stuessy, Tod F.
Villaseñor, Jose L.
Weiss-Schneeweiss, Hanna

March 2018

The PDF file containing the supplementary appendices (S1-S4) and supplementary tables (S1-S7) as cit...