Additional file 5 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Additional file 5: of Transcriptome signatures associated with meningioma progression

Angela Viaene (6652328)
Bo Zhang (6559)
Maria Martinez-Lage (739900)
Chaomei Xiang (386859)
Umberto Tosi (4775712)
Jayesh Thawani (6652331)
Busra Gungor (6652334)
Yuankun Zhu (4259395)
Laura Roccograndi (6652337)
Logan Zhang (6652340)
Robert Bailey (2419264)
Phillip Storm (6652343)
Donald OâRourke (6652346)
Adam Resnick (6652349)
M. Grady (6652352)
Nadia Dahmane (2162803)

April 2019

Table S4. List of significantly differentially expressed genes between all grade I and grade II-III ...

Tumor Heterogeneity and Molecular Characteristics of Glioblastoma Revealed by Single-Cell RNA-Seq Data Analysis

Dhanusha Yesudhas
S. Akila Parvathy Dharshini
Y-h. Taguchi
M. Michael Gromiha

February 2022

Glioblastoma multiforme (GBM) is the most common infiltrating lethal tumor of the brain. Tumor heter...

Additional file 5 of Comparative analysis of histologically classified oligodendrogliomas reveals characteristic molecular differences between subgroups

Chris Lauber (206300)
Barbara Klink (391506)
Michael Seifert (188260)

April 2018

104 signature genes differentially expressed between tumor grades II and III. (XLSX 13.7 kb

Additional file 4 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 4. Table S1. Differentially modified 5hmC features and differentially expressed mRNA...

Additional file 1 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 1. Fig. S1. (A) The percentages of genes with differential 5hmC modification and exp...

Additional file 2 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 2. Fig. S2. (A) Network hubs of co-regulated 5hmC-mRNA module M1. (B) Network hubs o...

Additional file 3 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 3. Fig. S3. Time-dependent ROC curves for IDH1-WT tumor patients’ survival with AUC ...

Additional file 4: of Transcriptomic and epigenetic profiling of âdiffuse midline gliomas, H3 K27M-mutantâ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
StĂŠphanie Puget (5933243)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Table S3. Lists of differentially expressed genes in microarrays data from H3-K27M vs. H3-WT, H3-G34...

Additional file 1: of DNA methylation, transcriptome and genetic copy number signatures of diffuse cerebral WHO grade II/III gliomas resolve cancer heterogeneity and development

H. Binder (6637619)
E. Willscher (6637622)
H. Loeffler-Wirth (6637625)
L. Hopp (6637628)
D. Jones (2844365)
S. Pfister (4061965)
M. Kreuz (6637631)
D. Gramatzki (6637634)
E. Fortenbacher (6637637)
B. Hentschel (6637640)
M. Tatagiba (6637643)
U. Herrlinger (6637646)
H. Vatter (6637649)
J. Matschke (6637652)
M. Westphal (6637655)
D. Krex (6637658)
G. Schackert (6637661)
J. Tonn (6637664)
U. Schlegel (6637667)
H.-J. Steiger (6637670)
W. Wick (770580)
R. Weber (1770592)
M. Weller (6637673)
M. Loeffler (6637676)

April 2019

Tables S3âS6. Contains all supplementary figures and supplementary tables. (PDF 2870 kb

Additional file 2 of A 35-gene signature discriminates between rapidly- and slowly-progressing glioblastoma multiforme and predicts survival in known subtypes of the cancer

Azeez A. Fatai (5055524)
Junaid Gamieldien (54547)

April 2018

Genes with high expression variance used in pathway enrichment analysis. (PDF 23.5 kb

Additional file 5: of Clinical significance of FBXO17 gene expression in high-grade glioma

Di Du (5576690)
Jian Yuan (585683)
Wencai Ma (792123)
Jing Ning (1481449)
John Weinstein (5576711)
Xianrui Yuan (5576720)
Greg Fuller (5576726)
Yuexin Liu (165945)

July 2018

Table S2. Univariate and Multivariate Models for Overall Survival in Patients with GBM in the TCGA C...

Additional file 1: of Transcriptomic and epigenetic profiling of âdiffuse midline gliomas, H3 K27M-mutantâ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
StĂŠphanie Puget (5933243)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Table S1. Summary of the 215 pHGG samples analyzed by either gene expression microarray, RNA-seq or ...

Additional file 5: of Transcriptomic and epigenetic profiling of ‘diffuse midline gliomas, H3 K27M-mutant’ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
Stéphanie Puget (5649988)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Figure S2. Principal component analysis of the GE profile of 21 DIPG using the gene associated with ...

Additional file 3: of Transcriptomic and epigenetic profiling of ‘diffuse midline gliomas, H3 K27M-mutant’ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
Stéphanie Puget (5649988)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Figure S1. A. Principal component analysis of microarray GE profiling of 119 high grade gliomas as p...

Additional file 2: of Distinctive epigenomes characterize glioma stem cells and their response to differentiation cues

Dan Zhou (29408)
Bonnie Alver (5022464)
Shuang Li (146392)
Ryan Hlady (5022461)
Joyce Thompson (5022467)
Mark Schroeder (14167)
Jeong-Heon Lee (310848)
Jingxin Qiu (5022470)
Philip Schwartz (193266)
Jann Sarkaria (830156)
Keith Robertson (3495848)

March 2018

Figures S1-S10 and Supplementary figure legends related to main text figures. (PPTX 6670 kb

Additional file 5: of Transcriptome signatures associated with meningioma progression

Angela Viaene (6652328)
Bo Zhang (6559)
Maria Martinez-Lage (739900)
Chaomei Xiang (386859)
Umberto Tosi (4775712)
Jayesh Thawani (6652331)
Busra Gungor (6652334)
Yuankun Zhu (4259395)
Laura Roccograndi (6652337)
Logan Zhang (6652340)
Robert Bailey (2419264)
Phillip Storm (6652343)
Donald OâRourke (6652346)
Adam Resnick (6652349)
M. Grady (6652352)
Nadia Dahmane (2162803)

April 2019

Table S4. List of significantly differentially expressed genes between all grade I and grade II-III ...

Tumor Heterogeneity and Molecular Characteristics of Glioblastoma Revealed by Single-Cell RNA-Seq Data Analysis

Dhanusha Yesudhas
S. Akila Parvathy Dharshini
Y-h. Taguchi
M. Michael Gromiha

February 2022

Glioblastoma multiforme (GBM) is the most common infiltrating lethal tumor of the brain. Tumor heter...

Additional file 5 of Comparative analysis of histologically classified oligodendrogliomas reveals characteristic molecular differences between subgroups

Chris Lauber (206300)
Barbara Klink (391506)
Michael Seifert (188260)

April 2018

104 signature genes differentially expressed between tumor grades II and III. (XLSX 13.7 kb

Additional file 4 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 4. Table S1. Differentially modified 5hmC features and differentially expressed mRNA...

Additional file 1 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 1. Fig. S1. (A) The percentages of genes with differential 5hmC modification and exp...

Additional file 2 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 2. Fig. S2. (A) Network hubs of co-regulated 5hmC-mRNA module M1. (B) Network hubs o...

Additional file 3 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Chang Zeng (8711847)
Xiao Song (107076)
Zhou Zhang (15028338)
Qinyun Cai (16830114)
Jiajun Cai (3484259)
Craig Horbinski (672614)
Bo Hu (126105)
Shi-Yuan Cheng (131531)
Wei Zhang (405)

August 2023

Additional file 3. Fig. S3. Time-dependent ROC curves for IDH1-WT tumor patients’ survival with AUC ...

Additional file 4: of Transcriptomic and epigenetic profiling of âdiffuse midline gliomas, H3 K27M-mutantâ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
StĂŠphanie Puget (5933243)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Table S3. Lists of differentially expressed genes in microarrays data from H3-K27M vs. H3-WT, H3-G34...

Additional file 1: of DNA methylation, transcriptome and genetic copy number signatures of diffuse cerebral WHO grade II/III gliomas resolve cancer heterogeneity and development

H. Binder (6637619)
E. Willscher (6637622)
H. Loeffler-Wirth (6637625)
L. Hopp (6637628)
D. Jones (2844365)
S. Pfister (4061965)
M. Kreuz (6637631)
D. Gramatzki (6637634)
E. Fortenbacher (6637637)
B. Hentschel (6637640)
M. Tatagiba (6637643)
U. Herrlinger (6637646)
H. Vatter (6637649)
J. Matschke (6637652)
M. Westphal (6637655)
D. Krex (6637658)
G. Schackert (6637661)
J. Tonn (6637664)
U. Schlegel (6637667)
H.-J. Steiger (6637670)
W. Wick (770580)
R. Weber (1770592)
M. Weller (6637673)
M. Loeffler (6637676)

April 2019

Tables S3âS6. Contains all supplementary figures and supplementary tables. (PDF 2870 kb

Additional file 2 of A 35-gene signature discriminates between rapidly- and slowly-progressing glioblastoma multiforme and predicts survival in known subtypes of the cancer

Azeez A. Fatai (5055524)
Junaid Gamieldien (54547)

April 2018

Genes with high expression variance used in pathway enrichment analysis. (PDF 23.5 kb

Additional file 5: of Clinical significance of FBXO17 gene expression in high-grade glioma

Di Du (5576690)
Jian Yuan (585683)
Wencai Ma (792123)
Jing Ning (1481449)
John Weinstein (5576711)
Xianrui Yuan (5576720)
Greg Fuller (5576726)
Yuexin Liu (165945)

July 2018

Table S2. Univariate and Multivariate Models for Overall Survival in Patients with GBM in the TCGA C...

Additional file 1: of Transcriptomic and epigenetic profiling of âdiffuse midline gliomas, H3 K27M-mutantâ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
StĂŠphanie Puget (5933243)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Table S1. Summary of the 215 pHGG samples analyzed by either gene expression microarray, RNA-seq or ...

Additional file 5: of Transcriptomic and epigenetic profiling of ‘diffuse midline gliomas, H3 K27M-mutant’ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
Stéphanie Puget (5649988)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Figure S2. Principal component analysis of the GE profile of 21 DIPG using the gene associated with ...

Additional file 3: of Transcriptomic and epigenetic profiling of ‘diffuse midline gliomas, H3 K27M-mutant’ discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location

David Castel (3215397)
Cathy Philippe (65400)
Thomas Kergrohen (5933225)
Martin Sill (3474476)
Jane Merlevede (5933228)
Emilie Barret (5933231)
Stéphanie Puget (5649988)
Christian Sainte-Rose (181607)
Christof Kramm (483244)
Chris Jones (25458)
Pascale Varlet (181573)
Stefan Pfister (30190)
Jacques Grill (87832)
David Jones (43312)
Marie-Anne Debily (3019)

November 2018

Figure S1. A. Principal component analysis of microarray GE profiling of 119 high grade gliomas as p...

Additional file 2: of Distinctive epigenomes characterize glioma stem cells and their response to differentiation cues

Dan Zhou (29408)
Bonnie Alver (5022464)
Shuang Li (146392)
Ryan Hlady (5022461)
Joyce Thompson (5022467)
Mark Schroeder (14167)
Jeong-Heon Lee (310848)
Jingxin Qiu (5022470)
Philip Schwartz (193266)
Jann Sarkaria (830156)
Keith Robertson (3495848)

March 2018

Figures S1-S10 and Supplementary figure legends related to main text figures. (PPTX 6670 kb

Additional file 5: of Transcriptome signatures associated with meningioma progression

Angela Viaene (6652328)
Bo Zhang (6559)
Maria Martinez-Lage (739900)
Chaomei Xiang (386859)
Umberto Tosi (4775712)
Jayesh Thawani (6652331)
Busra Gungor (6652334)
Yuankun Zhu (4259395)
Laura Roccograndi (6652337)
Logan Zhang (6652340)
Robert Bailey (2419264)
Phillip Storm (6652343)
Donald OâRourke (6652346)
Adam Resnick (6652349)
M. Grady (6652352)
Nadia Dahmane (2162803)

April 2019

Table S4. List of significantly differentially expressed genes between all grade I and grade II-III ...

Tumor Heterogeneity and Molecular Characteristics of Glioblastoma Revealed by Single-Cell RNA-Seq Data Analysis

Dhanusha Yesudhas
S. Akila Parvathy Dharshini
Y-h. Taguchi
M. Michael Gromiha

February 2022

Glioblastoma multiforme (GBM) is the most common infiltrating lethal tumor of the brain. Tumor heter...

Additional file 5 of Comparative analysis of histologically classified oligodendrogliomas reveals characteristic molecular differences between subgroups

Chris Lauber (206300)
Barbara Klink (391506)
Michael Seifert (188260)

April 2018

104 signature genes differentially expressed between tumor grades II and III. (XLSX 13.7 kb

Additional file 5 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Abstract

Extracted data

Additional file 5 of Dissection of transcriptomic and epigenetic heterogeneity of grade 4 gliomas: implications for prognosis

Abstract

Extracted data

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