International audienceThe complexity of real-world geophysical systems is often compounded by the fact that the observed measurements depend on hidden variables. These latent variables include unresolved small scales and/or rapidly evolving processes, partially observed couplings, or forcings in coupled systems. This is the case in ocean-atmosphere dynamics, for which unknown interior dynamics can affect surface observations. The identification of computationally-relevant representations of such partiallyobserved and highly nonlinear systems is thus challenging and often limited to short-term forecast applications. Here, we investigate the physics-constrained learning of implicit dynamical embeddings,leveraging neural ordinary differential ...