Significant SNPs identified with allelic transmission ratio distortion patterns by the allelic and genotypic model in horse genome.

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla : Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

McCue, Molly E.
Bannasch, Danika L.
Petersen, Jessica L.
Gurr, Jessica
Bailey, Ernie
Binns, Matthew M.
Distl, Ottmar
Guerin, Gerard
Hasegawa, Telhisa
Hill, Emmeline W.
Leeb, Tosso
Lindgren, Gabriella
Penedo, M. Cecilia T.
Roed, Knut H.
Ryder, Oliver A.
Swinburne, June E.
Tozaki, Teruaki
Valberg, Stephanie J.
Vaudin, Mark
Lindblad-Toh, Kerstin
Wade, Claire M.
Mickelson, James R.

January 2012

An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...

Manhattan plot of –log10P-values of the genome-wide association study for the severity score of equine recurrent uveitis (ERU) in German warmblood horses using a general linear model analysis.

Maike Kulbrock (445533)
Stefanie Lehner (445534)
Julia Metzger (149151)
Bernhard Ohnesorge (149153)
Ottmar Distl (102156)

August 2013

On the X-axis, the SNPs are given by horse chromosome number. The –log10P-values for e...

Genetic diversity in the modern horse illustrated from genome-wide SNP data.

Petersen, Jessica L
Mickelson, James R
Cothran, E Gus
Andersson, Lisa S
Axelsson, Jeanette
Bailey, Ernie
Bannasch, Danika
Binns, Matthew M
Borges, Alexandre S
Brama, Pieter
da Câmara Machado, Artur
Distl, Ottmar
Felicetti, Michela
Fox-Clipsham, Laura
Graves, Kathryn T
Guérin, Gérard
Haase, Bianca
Hasegawa, Telhisa
Hemmann, Karin
Hill, Emmeline W
Leeb, Tosso
Lindgren, Gabriella
Lohi, Hannes
Lopes, Maria Susana
McGivney, Beatrice A
Mikko, Sofia
Orr, Nicholas
Penedo, M Cecilia T
Piercy, Richard J
Raekallio, Marja
Rieder, Stefan
Røed, Knut H
Silvestrelli, Maurizio
Swinburne, June
Tozaki, Teruaki
Vaudin, Mark
M Wade, Claire
McCue, Molly E

January 2013

Horses were domesticated from the Eurasian steppes 5,000-6,000 years ago. Since then, the use of hor...

Manhattan plot of SNPs with allelic and genotypic transmission ratio distortion across the horse genome.

Nora Laseca (12098801)
Ángela Cánovas (3391583)
Mercedes Valera (12098804)
Samir Id-Lahoucine (5015405)
Davinia I. Perdomo-González (16806857)
Pablo A. S. Fonseca (4022972)
Sebastián Demyda-Peyrás (5492789)
Antonio Molina (537591)

August 2023

A) Bayes Factor of SNPs with TRD. B) Magnitude of TRD. Overall-TRD (Yellow); stallion-TRD (Green); m...

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying selection signals between the studied horse breeds.

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Monika Stefaniuk-Szmukier (3908575)
Tomasz Szmatoła (4585621)
Grażyna Polak (6278210)
Iwona Tomczyk-Wrona (6278213)
Monika Bugno-Poniewierska (3908578)

January 2019

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying...

Genome-wide SNP analysis of Japanese Thoroughbred racehorses.

Jeffrey A Fawcett
Fumio Sato
Takahiro Sakamoto
Watal M Iwasaki
Teruaki Tozaki
Hideki Innan

January 2019

The domestication process of plants and animals typically involves intense inbreeding and directiona...

Chromosome-wise distribution of genic and intergenic CNVRs in the horse genome.

Sharmila Ghosh (650368)
Zhipeng Qu (110511)
Pranab J. Das (108518)
Erica Fang (650369)
Rytis Juras (650370)
E. Gus Cothran (102148)
Sue McDonell (650371)
Daniel G. Kenney (650372)
Teri L. Lear (650373)
David L. Adelson (110514)
Bhanu P. Chowdhary (108534)
Terje Raudsepp (108514)

October 2014

Chromosome-wise distribution of genic and intergenic CNVRs in the horse genome.</p

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying selection signals between the major studied horse types.

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Monika Stefaniuk-Szmukier (3908575)
Tomasz Szmatoła (4585621)
Grażyna Polak (6278210)
Iwona Tomczyk-Wrona (6278213)
Monika Bugno-Poniewierska (3908578)

January 2019

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying...

Genome-wide association studies based on sequence-derived genotypes reveal new QTL associated with conformation and performance traits in the Franches-Montagnes horse breed

Frischknecht, Mirjam
Signer-Hasler, H
Leeb, Tosso
Rieder, S
Neuditschko, M

January 2016

To identify novel quantitative trait loci (QTL) within horses, we performed genome-wide association ...

Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Sole, Marina
Ablondi, Michela
Binzer-Panchal, Amrei
Velie, Brandon D
Hollfelder, Nina
Buys, Nadine
Ducro, Bart J
Francois, Liesbeth
Janssens, Steven
Schurink, Anouk
Viklund, Asa
Eriksson, Susanne
Isaksson, Anders
Kultima, Hanna
Mikko, Sofia
Lindgren, Gabriella

October 2019

BACKGROUND: Copy Number Variation (CNV) is a common form of genetic variation underlying animal evol...

Genome-wide association study for jumping performances in French sport horses

Brard, Sophie
Ricard, Anne

January 2015

A genome-wide association study was performed to identify single nucleotide polymorphisms (SNPs) ass...

Risk of false positive genetic associations in complex traits with underlying population structure: A case study

Finno, Carrie J
Aleman, Monica
Higgins, Robert J
Madigan, John E
Bannasch, Danika L

December 2014

Genome-wide association (GWA) studies are widely used to investigate the genetic etiology of disease...

A high density SNP array for the domestic horse and extant perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies

Bannasch, Danika L.
Petersen, Jessica L.
Gurr, Jessica
Bailey, Ernie
Binns, Matthew M.
Distl, Ottmar
Guérin, Gerard
Hasegawa, Telhisa
Hill, Emmeline W.
Leeb, Tosso
Lindgren, Gabriella
Penedo, Cecilia T.
Røed, Knut H.
Ryder, Oliver A.
Swinburne, June E.
Tozaki, Teruaki
Valberg, Stephanie J.
Vaudin, Mark
Lindblad-Toh, Kerstin
Wade, Claire M.
Mickelson, James R.

January 2012

An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...

Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare

Doan Ryan
Cohen Noah D
Sawyer Jason
Ghaffari Noushin
Johnson Charlie D
Dindot Scott V

February 2012

Abstract Background The catalog of genetic variants in the horse genome originates from a few select...

Haplotypes at the LCORL locus on horse chromosome 3 are associated with size.

Shokouh Makvandi-Nejad (316188)
Gabriel E. Hoffman (316189)
Jeremy J. Allen (316190)
Erin Chu (316191)
Esther Gu (316192)
Alyssa M. Chandler (316194)
Ariel I. Loredo (316196)
Rebecca R. Bellone (316199)
Jason G. Mezey (124725)
Samantha A. Brooks (171540)
Nathan B. Sutter (244092)

February 2013

(A) Haplotypes for five SNPs were inferred with PHASE and (B) have different counts in the set of...

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla : Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

McCue, Molly E.
Bannasch, Danika L.
Petersen, Jessica L.
Gurr, Jessica
Bailey, Ernie
Binns, Matthew M.
Distl, Ottmar
Guerin, Gerard
Hasegawa, Telhisa
Hill, Emmeline W.
Leeb, Tosso
Lindgren, Gabriella
Penedo, M. Cecilia T.
Roed, Knut H.
Ryder, Oliver A.
Swinburne, June E.
Tozaki, Teruaki
Valberg, Stephanie J.
Vaudin, Mark
Lindblad-Toh, Kerstin
Wade, Claire M.
Mickelson, James R.

January 2012

An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...

Manhattan plot of –log10P-values of the genome-wide association study for the severity score of equine recurrent uveitis (ERU) in German warmblood horses using a general linear model analysis.

Maike Kulbrock (445533)
Stefanie Lehner (445534)
Julia Metzger (149151)
Bernhard Ohnesorge (149153)
Ottmar Distl (102156)

August 2013

On the X-axis, the SNPs are given by horse chromosome number. The –log10P-values for e...

Genetic diversity in the modern horse illustrated from genome-wide SNP data.

Petersen, Jessica L
Mickelson, James R
Cothran, E Gus
Andersson, Lisa S
Axelsson, Jeanette
Bailey, Ernie
Bannasch, Danika
Binns, Matthew M
Borges, Alexandre S
Brama, Pieter
da Câmara Machado, Artur
Distl, Ottmar
Felicetti, Michela
Fox-Clipsham, Laura
Graves, Kathryn T
Guérin, Gérard
Haase, Bianca
Hasegawa, Telhisa
Hemmann, Karin
Hill, Emmeline W
Leeb, Tosso
Lindgren, Gabriella
Lohi, Hannes
Lopes, Maria Susana
McGivney, Beatrice A
Mikko, Sofia
Orr, Nicholas
Penedo, M Cecilia T
Piercy, Richard J
Raekallio, Marja
Rieder, Stefan
Røed, Knut H
Silvestrelli, Maurizio
Swinburne, June
Tozaki, Teruaki
Vaudin, Mark
M Wade, Claire
McCue, Molly E

January 2013

Horses were domesticated from the Eurasian steppes 5,000-6,000 years ago. Since then, the use of hor...

Manhattan plot of SNPs with allelic and genotypic transmission ratio distortion across the horse genome.

Nora Laseca (12098801)
Ángela Cánovas (3391583)
Mercedes Valera (12098804)
Samir Id-Lahoucine (5015405)
Davinia I. Perdomo-González (16806857)
Pablo A. S. Fonseca (4022972)
Sebastián Demyda-Peyrás (5492789)
Antonio Molina (537591)

August 2023

A) Bayes Factor of SNPs with TRD. B) Magnitude of TRD. Overall-TRD (Yellow); stallion-TRD (Green); m...

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying selection signals between the studied horse breeds.

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Monika Stefaniuk-Szmukier (3908575)
Tomasz Szmatoła (4585621)
Grażyna Polak (6278210)
Iwona Tomczyk-Wrona (6278213)
Monika Bugno-Poniewierska (3908578)

January 2019

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying...

Genome-wide SNP analysis of Japanese Thoroughbred racehorses.

Jeffrey A Fawcett
Fumio Sato
Takahiro Sakamoto
Watal M Iwasaki
Teruaki Tozaki
Hideki Innan

January 2019

The domestication process of plants and animals typically involves intense inbreeding and directiona...

Chromosome-wise distribution of genic and intergenic CNVRs in the horse genome.

Sharmila Ghosh (650368)
Zhipeng Qu (110511)
Pranab J. Das (108518)
Erica Fang (650369)
Rytis Juras (650370)
E. Gus Cothran (102148)
Sue McDonell (650371)
Daniel G. Kenney (650372)
Teri L. Lear (650373)
David L. Adelson (110514)
Bhanu P. Chowdhary (108534)
Terje Raudsepp (108514)

October 2014

Chromosome-wise distribution of genic and intergenic CNVRs in the horse genome.</p

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying selection signals between the major studied horse types.

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Monika Stefaniuk-Szmukier (3908575)
Tomasz Szmatoła (4585621)
Grażyna Polak (6278210)
Iwona Tomczyk-Wrona (6278213)
Monika Bugno-Poniewierska (3908578)

January 2019

Genome regions spanning the top 99.9 percentile of di values representing the strongest diversifying...

Genome-wide association studies based on sequence-derived genotypes reveal new QTL associated with conformation and performance traits in the Franches-Montagnes horse breed

Frischknecht, Mirjam
Signer-Hasler, H
Leeb, Tosso
Rieder, S
Neuditschko, M

January 2016

To identify novel quantitative trait loci (QTL) within horses, we performed genome-wide association ...

Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Sole, Marina
Ablondi, Michela
Binzer-Panchal, Amrei
Velie, Brandon D
Hollfelder, Nina
Buys, Nadine
Ducro, Bart J
Francois, Liesbeth
Janssens, Steven
Schurink, Anouk
Viklund, Asa
Eriksson, Susanne
Isaksson, Anders
Kultima, Hanna
Mikko, Sofia
Lindgren, Gabriella

October 2019

BACKGROUND: Copy Number Variation (CNV) is a common form of genetic variation underlying animal evol...

Genome-wide association study for jumping performances in French sport horses

Brard, Sophie
Ricard, Anne

January 2015

A genome-wide association study was performed to identify single nucleotide polymorphisms (SNPs) ass...

Risk of false positive genetic associations in complex traits with underlying population structure: A case study

Finno, Carrie J
Aleman, Monica
Higgins, Robert J
Madigan, John E
Bannasch, Danika L

December 2014

Genome-wide association (GWA) studies are widely used to investigate the genetic etiology of disease...

A high density SNP array for the domestic horse and extant perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies

Bannasch, Danika L.
Petersen, Jessica L.
Gurr, Jessica
Bailey, Ernie
Binns, Matthew M.
Distl, Ottmar
Guérin, Gerard
Hasegawa, Telhisa
Hill, Emmeline W.
Leeb, Tosso
Lindgren, Gabriella
Penedo, Cecilia T.
Røed, Knut H.
Ryder, Oliver A.
Swinburne, June E.
Tozaki, Teruaki
Valberg, Stephanie J.
Vaudin, Mark
Lindblad-Toh, Kerstin
Wade, Claire M.
Mickelson, James R.

January 2012

An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...

Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare

Doan Ryan
Cohen Noah D
Sawyer Jason
Ghaffari Noushin
Johnson Charlie D
Dindot Scott V

February 2012

Abstract Background The catalog of genetic variants in the horse genome originates from a few select...

Haplotypes at the LCORL locus on horse chromosome 3 are associated with size.

Shokouh Makvandi-Nejad (316188)
Gabriel E. Hoffman (316189)
Jeremy J. Allen (316190)
Erin Chu (316191)
Esther Gu (316192)
Alyssa M. Chandler (316194)
Ariel I. Loredo (316196)
Rebecca R. Bellone (316199)
Jason G. Mezey (124725)
Samantha A. Brooks (171540)
Nathan B. Sutter (244092)

February 2013

(A) Haplotypes for five SNPs were inferred with PHASE and (B) have different counts in the set of...

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla : Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

McCue, Molly E.
Bannasch, Danika L.
Petersen, Jessica L.
Gurr, Jessica
Bailey, Ernie
Binns, Matthew M.
Distl, Ottmar
Guerin, Gerard
Hasegawa, Telhisa
Hill, Emmeline W.
Leeb, Tosso
Lindgren, Gabriella
Penedo, M. Cecilia T.
Roed, Knut H.
Ryder, Oliver A.
Swinburne, June E.
Tozaki, Teruaki
Valberg, Stephanie J.
Vaudin, Mark
Lindblad-Toh, Kerstin
Wade, Claire M.
Mickelson, James R.

January 2012

An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...

Manhattan plot of –log10P-values of the genome-wide association study for the severity score of equine recurrent uveitis (ERU) in German warmblood horses using a general linear model analysis.

Maike Kulbrock (445533)
Stefanie Lehner (445534)
Julia Metzger (149151)
Bernhard Ohnesorge (149153)
Ottmar Distl (102156)

August 2013

On the X-axis, the SNPs are given by horse chromosome number. The –log10P-values for e...

Genetic diversity in the modern horse illustrated from genome-wide SNP data.

Petersen, Jessica L
Mickelson, James R
Cothran, E Gus
Andersson, Lisa S
Axelsson, Jeanette
Bailey, Ernie
Bannasch, Danika
Binns, Matthew M
Borges, Alexandre S
Brama, Pieter
da Câmara Machado, Artur
Distl, Ottmar
Felicetti, Michela
Fox-Clipsham, Laura
Graves, Kathryn T
Guérin, Gérard
Haase, Bianca
Hasegawa, Telhisa
Hemmann, Karin
Hill, Emmeline W
Leeb, Tosso
Lindgren, Gabriella
Lohi, Hannes
Lopes, Maria Susana
McGivney, Beatrice A
Mikko, Sofia
Orr, Nicholas
Penedo, M Cecilia T
Piercy, Richard J
Raekallio, Marja
Rieder, Stefan
Røed, Knut H
Silvestrelli, Maurizio
Swinburne, June
Tozaki, Teruaki
Vaudin, Mark
M Wade, Claire
McCue, Molly E

January 2013

Horses were domesticated from the Eurasian steppes 5,000-6,000 years ago. Since then, the use of hor...

Significant SNPs identified with allelic transmission ratio distortion patterns by the allelic and genotypic model in horse genome.

Abstract

Extracted data

Significant SNPs identified with allelic transmission ratio distortion patterns by the allelic and genotypic model in horse genome.

Abstract

Extracted data

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