In this paper, we present a dynamics modeling approach for lithographic machines. These machines consist of N-open chains with multiple stages in each chain. A stage can suppress or exert motion in specific directions. The stages affect each other through the structural connections available within a chain or various chains. We want to capture the energy transfer in the machine to better realize the design requirements. A specific application will be the optical lithography wafer-scanner machine. In such machines, step-and-scan motion profiles demand synchronization between the chains end-effectors. The rapid production rates requirements are projected onto the design space as high-acceleration profiles that will cause vibration based on th...