Major changes (full Methods here): :tada: Inter-subject alignment is now further refined using registration in unfolded space! :rocket: The default subfield parcellation scheme is now based on the maxprob of seven histology samples. Together these changes align subfield boundaries to within approximately 0.5mm! :computer: Can (optionally) specify alternative U-Net tissue segmentation models, including contrast-agnositic synthseg (https://github.com/khanlab/hippunfold/pull/244) Minor chages: :bug: Bug fix for inner/outer surfaces sometimes being pushed outside of hippocampus (https://github.com/khanlab/hippunfold/pull/236) :bug: Curvature is no longer calculated on a smoothed surface, and is instead normalized via a tanh function (https:...
Hippocampal Tissue segmentations, T1w, T2w, and mean DWI b1000 images in upsampled 0.3mm left and ri...
Changes Features workflow updates to allow T2w without T1w @akhanf (#153) Unfold DG @jordandekrake...
The neuroimaging field is moving toward micron scale and molecular features in digital pathology and...
Major changes (full Methods here): :tada: Inter-subject alignment is now further refined using regi...
Experiments run to test HippUnfold and similar software packages (FS7 and ASHS) on extant opensource...
Hippocampal subfields are differentially sensitive in development, aging, and neurodegenerative dise...
Changes Features added --version to CLI (via snakebids.yml) @akhanf (#210) allows output of subfie...
First published: 23 November 2017Automated segmentation of hippocampal (HC) subfields from magnetic ...
The hippocampus, like the neocortex, has a morphological structure that is complex and variable in i...
The hippocampal subfields are defined by their unique cytoarchitectures, which many recent studies h...
IntroductionHeterogeneity of segmentation protocols for medial temporal lobe regions and hippocampal...
Erratum: The tensor $W_j$ should be defined as $W_j = J^T.J$ and not as $W_j = J.J^T$.International ...
The primary contribution of this dissertation is a computational atlas of the human hippocampus from...
Researchers who study the human hippocampus are naturally interested in how its subfields function. ...
The primary contribution of this dissertation is a computational atlas of the human hippocampus from...
Hippocampal Tissue segmentations, T1w, T2w, and mean DWI b1000 images in upsampled 0.3mm left and ri...
Changes Features workflow updates to allow T2w without T1w @akhanf (#153) Unfold DG @jordandekrake...
The neuroimaging field is moving toward micron scale and molecular features in digital pathology and...
Major changes (full Methods here): :tada: Inter-subject alignment is now further refined using regi...
Experiments run to test HippUnfold and similar software packages (FS7 and ASHS) on extant opensource...
Hippocampal subfields are differentially sensitive in development, aging, and neurodegenerative dise...
Changes Features added --version to CLI (via snakebids.yml) @akhanf (#210) allows output of subfie...
First published: 23 November 2017Automated segmentation of hippocampal (HC) subfields from magnetic ...
The hippocampus, like the neocortex, has a morphological structure that is complex and variable in i...
The hippocampal subfields are defined by their unique cytoarchitectures, which many recent studies h...
IntroductionHeterogeneity of segmentation protocols for medial temporal lobe regions and hippocampal...
Erratum: The tensor $W_j$ should be defined as $W_j = J^T.J$ and not as $W_j = J.J^T$.International ...
The primary contribution of this dissertation is a computational atlas of the human hippocampus from...
Researchers who study the human hippocampus are naturally interested in how its subfields function. ...
The primary contribution of this dissertation is a computational atlas of the human hippocampus from...
Hippocampal Tissue segmentations, T1w, T2w, and mean DWI b1000 images in upsampled 0.3mm left and ri...
Changes Features workflow updates to allow T2w without T1w @akhanf (#153) Unfold DG @jordandekrake...
The neuroimaging field is moving toward micron scale and molecular features in digital pathology and...