<ul> <li>added taxonkit</li> <li>added entrez-direct</li> <li>added <code>bit-update-ncbi-taxonomy</code> script to update the database taxonkit uses</li> <li>adding <code>bit-combine-bracken-and-add-lineage</code> script</li> </ul>
<ul> <li>improved <code>bit-calc-msa-shannon</code> and changed name to <...
<ul> <li>added 'gene_call' column to <code>bit-gff-to-anvio</code></li>...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> <li&...
<ul> <li>added taxonkit</li> <li>added entrez-direct</li> <li>ad...
added taxonkit added entrez-direct added bit-update-ncbi-taxonomy script to update the database taxo...
<ul> <li>adding <code>bit-get-lineage-from-taxids</code></li> </ul&...
<ul> <li>updating <code>bit-GL-*</code> programs</li> </ul>
<ul> <li>updating <code>bit-summarize-assembly</code></li> </ul>
<ul> <li>added <code>bit-cov-propagate-go-terms</code></li> </ul>
<ul> <li>added <code>bit-GL-combine-contig-tax-tables</code></li> <...
<ul> <li>added <code>bit-filter-KOFamScan-results</code> program</li> ...
<p>adding new DBs and programs for working with GO! <code>bit-get-go-term-info</code...
<p>adding <code>bit-kraken2-to-taxon-summaries</code> and <code>bit-combine-...
<p>adding new DBs and programs for working with GO! <code>bit-get-go-term-info</code...
<ul> <li>fixing optional output file name for <code>bit-combine-bracken-and-add-li...
<ul> <li>improved <code>bit-calc-msa-shannon</code> and changed name to <...
<ul> <li>added 'gene_call' column to <code>bit-gff-to-anvio</code></li>...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> <li&...
<ul> <li>added taxonkit</li> <li>added entrez-direct</li> <li>ad...
added taxonkit added entrez-direct added bit-update-ncbi-taxonomy script to update the database taxo...
<ul> <li>adding <code>bit-get-lineage-from-taxids</code></li> </ul&...
<ul> <li>updating <code>bit-GL-*</code> programs</li> </ul>
<ul> <li>updating <code>bit-summarize-assembly</code></li> </ul>
<ul> <li>added <code>bit-cov-propagate-go-terms</code></li> </ul>
<ul> <li>added <code>bit-GL-combine-contig-tax-tables</code></li> <...
<ul> <li>added <code>bit-filter-KOFamScan-results</code> program</li> ...
<p>adding new DBs and programs for working with GO! <code>bit-get-go-term-info</code...
<p>adding <code>bit-kraken2-to-taxon-summaries</code> and <code>bit-combine-...
<p>adding new DBs and programs for working with GO! <code>bit-get-go-term-info</code...
<ul> <li>fixing optional output file name for <code>bit-combine-bracken-and-add-li...
<ul> <li>improved <code>bit-calc-msa-shannon</code> and changed name to <...
<ul> <li>added 'gene_call' column to <code>bit-gff-to-anvio</code></li>...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> <li&...
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