Publication date
June 2023
DOIAbstract
some bug fixes: fix compatibility with RNASeqTools 0.3.5 fix genome coordinates in ligation points plot fix edge case bounds error for alignments close to reference sequence start/en
some bug fixes: fix compatibility with RNASeqTools 0.3.5 fix genome coordinates in ligation points plot fix edge case bounds error for alignments close to reference sequence start/en
new features: added plots as help for choosing better analysis parameters basepairing prediction pa...
Major updates: Fixed bug when translating sequences using Biostrings::translate which by default as...
fixes gene labels in figure 1 tree and alignment while manuscript was in the proof stage
minor improvements and fixes: correct visualization for separate handling of CDS and UTRs correct c...
colored edges correspond to significance of basepairing now using rank correlation between replicate...
updated dbCAN links important bug fix for RNA-seq analysis. the bam2gff3 function was not outputting...
some minor improvements: put large basepairing predictions and ligation point distributions into sc...
<p>Input NGS reads are manually loaded through a graphical interface, followed by user-determined 5’...
Fixes a small bug in the alignment where a single base pair in BDNF was omitted in the initial relea...
This release fixes minor bugs and adds critical new functionality to generate an automatically filte...
fix the scaffolding bug for script1_Genome_assembly.sh; resolve aligning issues from MAFFT
Bug Fixes Users are now warned when there are no useful assembly alignments Enhancements Introduc...
Added Some common errors in alignments will be automatically fixed when loading an alignment. This ...
fixes: ligation point computation in certain cases multi-chimeras were counted twice in many cases ...
To the editor: Several recent reports describe the use of chimeric RNA/DNA oligonucleotides (RDOs) t...
new features: added plots as help for choosing better analysis parameters basepairing prediction pa...
Major updates: Fixed bug when translating sequences using Biostrings::translate which by default as...
fixes gene labels in figure 1 tree and alignment while manuscript was in the proof stage
minor improvements and fixes: correct visualization for separate handling of CDS and UTRs correct c...
colored edges correspond to significance of basepairing now using rank correlation between replicate...
updated dbCAN links important bug fix for RNA-seq analysis. the bam2gff3 function was not outputting...
some minor improvements: put large basepairing predictions and ligation point distributions into sc...
<p>Input NGS reads are manually loaded through a graphical interface, followed by user-determined 5’...
Fixes a small bug in the alignment where a single base pair in BDNF was omitted in the initial relea...
This release fixes minor bugs and adds critical new functionality to generate an automatically filte...
fix the scaffolding bug for script1_Genome_assembly.sh; resolve aligning issues from MAFFT
Bug Fixes Users are now warned when there are no useful assembly alignments Enhancements Introduc...
Added Some common errors in alignments will be automatically fixed when loading an alignment. This ...
fixes: ligation point computation in certain cases multi-chimeras were counted twice in many cases ...
To the editor: Several recent reports describe the use of chimeric RNA/DNA oligonucleotides (RDOs) t...
new features: added plots as help for choosing better analysis parameters basepairing prediction pa...
Major updates: Fixed bug when translating sequences using Biostrings::translate which by default as...
fixes gene labels in figure 1 tree and alignment while manuscript was in the proof stage
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