Highlights • Microbe-mediated transformation of metal sulfide has enormous environmental impact. • Microbes provide templates for mineralization of metal sulfide crystals. • Sulfate reducing bacteria recover metal ions through metal sulfide precipitation. • Biosynthetic metal sulfide nanoparticles play a big role in pollutant sensing and treatment. • Metal sulfide-microbe biohybrid system has greater prospects in environmental field. Microorganisms play a key role in the natural circulation of various constituent elements of metal sulfides. Some microorganisms (such as Thiobacillus ferrooxidans) can promote the oxidation of metal sulfides to increase the release of heavy metals. However, other microorganisms (such as Des...