Maximum Likelihood Phylogeny of the Western Mediterranean clade with all known ancient genomes.

Phylogenetic hypotheses based on the complete mitochondrial genomes and nuclear segments for the Phasianidae.

Yong-Yi Shen (123038)
Kun Dai (104355)
Xue Cao (587751)
Robert W. Murphy (102800)
Xue-Juan Shen (587752)
Ya-Ping Zhang (53956)

April 2014

(a) Mt genomes; newly sequenced mt genomes denoted in bold. (b) Nuclear segments. Bayesian poster...

Maximum likelihood phylogeny of 164 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species

The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Syst. Biol

Mark Pagel

January 1999

A phylogeny describes the hierarchical pattern of descent of some group of species from a common anc...

Maximum Likelihood Phylogeny the Western Mediterranean clade.

George S. Long (16715698)
Jessica Hider (12780236)
Ana T. Duggan (16715701)
Jennifer Klunk (4735107)
Katherine Eaton (8166330)
Emil Karpinski (16715704)
Valentina Giuffra (4735104)
Luca Ventura (16715707)
Tracy L. Prowse (16715710)
Antonio Fornaciari (16715713)
Gino Fornaciari (802014)
Edward C. Holmes (8067413)
G. Brian Golding (8949515)
Hendrik N. Poinar (9141054)

July 2023

Core SNP ML phylogeny of the Western Mediterranean phylogenetic group. The red bars at the nodes ind...

The core genome phylogeny obtained by the maximum-likelihood method with x100 bootstrapping.

Tsuyoshi Sekizuka (249989)
Akifumi Yamashita (198475)
Yoshiro Murase (797570)
Tomotada Iwamoto (118148)
Satoshi Mitarai (687324)
Seiya Kato (206493)
Makoto Kuroda (249974)

November 2015

The core genome phylogeny obtained by the maximum-likelihood method with x100 bootstrapping.</p

Estimated times of the most recent common ancestors (tMRCAs) of the main clades and 95% credibility intervals (HPD), with calendar years, most probable locations, and state posterior probabilities (spp) derived from discrete phylogeography of the 44 genomes of serovar Napoli.

Maria Gori (4023869)
Erika Ebranati (120461)
Erika Scaltriti (5370857)
Pol Huedo (427090)
Giulia Ciceri (5675960)
Elisabetta Tanzi (162726)
Mirella Pontello (4023872)
Gianguglielmo Zehender (120450)
Stefano Pongolini (3709228)
Luca Bolzoni (273163)

August 2018

Estimated times of the most recent common ancestors (tMRCAs) of the main clades and 95% credibility ...

Phylogenetic relationships of the nineteen Camellia species constructed from the complete chloroplast genome sequences using maximum likelihood (ML) and maximum parsimony methods (MP).

Wei Li (7081)
Cuiping Zhang (325875)
Xiao Guo (542560)
Qinghua Liu (64392)
Kuiling Wang (5617289)

May 2019

Phylogenetic relationships of the nineteen Camellia species constructed from the complete chloroplas...

Phylogenetic analysis of the Western Mediterranean clade.

George S. Long (16715698)
Jessica Hider (12780236)
Ana T. Duggan (16715701)
Jennifer Klunk (4735107)
Katherine Eaton (8166330)
Emil Karpinski (16715704)
Valentina Giuffra (4735104)
Luca Ventura (16715707)
Tracy L. Prowse (16715710)
Antonio Fornaciari (16715713)
Gino Fornaciari (802014)
Edward C. Holmes (8067413)
G. Brian Golding (8949515)
Hendrik N. Poinar (9141054)

July 2023

Core SNP Bayesian phylogeny of the Western Mediterranean phylogenetic group. The red bars at the nod...

Estimating Maximum Likelihood Phylogenies with PhyML

Olivier Gascuel, et al.

January 2009

Our understanding of the origins, the functions and/or the structures of biological sequences strong...

Estimating maximum likelihood phylogenies with PhyML

Guindon, Stéphane
Delsuc, Frédéric
Dufayard, Jean-François
Gascuel, Olivier

January 2009

International audienceOur understanding of the origins, the functions and/or the structures of biolo...

Phylogeny

Gengyun Niu (665680)
Özgül Doğan (12618465)
Ertan Mahir Korkmaz (4894573)
Mahir Budak (12827126)
andre nel (3211821)
Siying Wan (9998570)
Cai Chenyang (12827157)
Corentin Jouault (12827183)
Li Min (12827184)
Meicai Wei (665670)

September 2022

The phylogentic reconstructions based on nuclear genes and mitochondrial sequences.</p

Trees

Tomasz, Mamos
Remi, Wattier
Artur, Burzyński
Michał, Grabowski

November 2015

All trees generated for the publication in editable formats (nexus and newick). Fig. 2 The history ...

Maximum likelihood phylogeny of 309 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 309 species, includin...

Maximum likelihood phylogenetic reconstruction using CHIKV nucleotide complete coding sequences.

Nanikaly Moyen (402988)
Simon-Djamel Thiberville (102397)
Boris Pastorino (322367)
Antoine Nougairede (5649739)
Laurence Thirion (230519)
Jean-Vivien Mombouli (679316)
Yannick Dimi (679317)
Isabelle Leparc-Goffart (213294)
Maria Rosaria Capobianchi (103665)
Amelia Dzia Lepfoundzou (679318)
Xavier de Lamballerie (95840)

December 2014

Maximum likelihood phylogenetic reconstruction using CHIKV nucleotide complete coding sequences.<...

Maximum likelihood phylogeny of the 361 common complete protein sequences.

Claire Guérin (6429845)
Jane Roche (5447267)
Vincent Allard (709432)
Catherine Ravel (741193)
Said Mouzeyar (86761)
Mohamed Fouad Bouzidi (86758)

March 2019

The zoom focused on the clade studied as a case of duplication. Colors indicate the number of exons ...

Phylogenetic hypotheses based on the complete mitochondrial genomes and nuclear segments for the Phasianidae.

Yong-Yi Shen (123038)
Kun Dai (104355)
Xue Cao (587751)
Robert W. Murphy (102800)
Xue-Juan Shen (587752)
Ya-Ping Zhang (53956)

April 2014

(a) Mt genomes; newly sequenced mt genomes denoted in bold. (b) Nuclear segments. Bayesian poster...

Maximum likelihood phylogeny of 164 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species

The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Syst. Biol

Mark Pagel

January 1999

A phylogeny describes the hierarchical pattern of descent of some group of species from a common anc...

Maximum Likelihood Phylogeny the Western Mediterranean clade.

George S. Long (16715698)
Jessica Hider (12780236)
Ana T. Duggan (16715701)
Jennifer Klunk (4735107)
Katherine Eaton (8166330)
Emil Karpinski (16715704)
Valentina Giuffra (4735104)
Luca Ventura (16715707)
Tracy L. Prowse (16715710)
Antonio Fornaciari (16715713)
Gino Fornaciari (802014)
Edward C. Holmes (8067413)
G. Brian Golding (8949515)
Hendrik N. Poinar (9141054)

July 2023

Core SNP ML phylogeny of the Western Mediterranean phylogenetic group. The red bars at the nodes ind...

The core genome phylogeny obtained by the maximum-likelihood method with x100 bootstrapping.

Tsuyoshi Sekizuka (249989)
Akifumi Yamashita (198475)
Yoshiro Murase (797570)
Tomotada Iwamoto (118148)
Satoshi Mitarai (687324)
Seiya Kato (206493)
Makoto Kuroda (249974)

November 2015

The core genome phylogeny obtained by the maximum-likelihood method with x100 bootstrapping.</p

Estimated times of the most recent common ancestors (tMRCAs) of the main clades and 95% credibility intervals (HPD), with calendar years, most probable locations, and state posterior probabilities (spp) derived from discrete phylogeography of the 44 genomes of serovar Napoli.

Maria Gori (4023869)
Erika Ebranati (120461)
Erika Scaltriti (5370857)
Pol Huedo (427090)
Giulia Ciceri (5675960)
Elisabetta Tanzi (162726)
Mirella Pontello (4023872)
Gianguglielmo Zehender (120450)
Stefano Pongolini (3709228)
Luca Bolzoni (273163)

August 2018

Estimated times of the most recent common ancestors (tMRCAs) of the main clades and 95% credibility ...

Phylogenetic relationships of the nineteen Camellia species constructed from the complete chloroplast genome sequences using maximum likelihood (ML) and maximum parsimony methods (MP).

Wei Li (7081)
Cuiping Zhang (325875)
Xiao Guo (542560)
Qinghua Liu (64392)
Kuiling Wang (5617289)

May 2019

Phylogenetic relationships of the nineteen Camellia species constructed from the complete chloroplas...

Phylogenetic analysis of the Western Mediterranean clade.

George S. Long (16715698)
Jessica Hider (12780236)
Ana T. Duggan (16715701)
Jennifer Klunk (4735107)
Katherine Eaton (8166330)
Emil Karpinski (16715704)
Valentina Giuffra (4735104)
Luca Ventura (16715707)
Tracy L. Prowse (16715710)
Antonio Fornaciari (16715713)
Gino Fornaciari (802014)
Edward C. Holmes (8067413)
G. Brian Golding (8949515)
Hendrik N. Poinar (9141054)

July 2023

Core SNP Bayesian phylogeny of the Western Mediterranean phylogenetic group. The red bars at the nod...

Estimating Maximum Likelihood Phylogenies with PhyML

Olivier Gascuel, et al.

January 2009

Our understanding of the origins, the functions and/or the structures of biological sequences strong...

Estimating maximum likelihood phylogenies with PhyML

Guindon, Stéphane
Delsuc, Frédéric
Dufayard, Jean-François
Gascuel, Olivier

January 2009

International audienceOur understanding of the origins, the functions and/or the structures of biolo...

Phylogeny

Gengyun Niu (665680)
Özgül Doğan (12618465)
Ertan Mahir Korkmaz (4894573)
Mahir Budak (12827126)
andre nel (3211821)
Siying Wan (9998570)
Cai Chenyang (12827157)
Corentin Jouault (12827183)
Li Min (12827184)
Meicai Wei (665670)

September 2022

The phylogentic reconstructions based on nuclear genes and mitochondrial sequences.</p

Trees

Tomasz, Mamos
Remi, Wattier
Artur, Burzyński
Michał, Grabowski

November 2015

All trees generated for the publication in editable formats (nexus and newick). Fig. 2 The history ...

Maximum likelihood phylogeny of 309 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 309 species, includin...

Maximum likelihood phylogenetic reconstruction using CHIKV nucleotide complete coding sequences.

Nanikaly Moyen (402988)
Simon-Djamel Thiberville (102397)
Boris Pastorino (322367)
Antoine Nougairede (5649739)
Laurence Thirion (230519)
Jean-Vivien Mombouli (679316)
Yannick Dimi (679317)
Isabelle Leparc-Goffart (213294)
Maria Rosaria Capobianchi (103665)
Amelia Dzia Lepfoundzou (679318)
Xavier de Lamballerie (95840)

December 2014

Maximum likelihood phylogenetic reconstruction using CHIKV nucleotide complete coding sequences.<...

Maximum likelihood phylogeny of the 361 common complete protein sequences.

Claire Guérin (6429845)
Jane Roche (5447267)
Vincent Allard (709432)
Catherine Ravel (741193)
Said Mouzeyar (86761)
Mohamed Fouad Bouzidi (86758)

March 2019

The zoom focused on the clade studied as a case of duplication. Colors indicate the number of exons ...

Phylogenetic hypotheses based on the complete mitochondrial genomes and nuclear segments for the Phasianidae.

Yong-Yi Shen (123038)
Kun Dai (104355)
Xue Cao (587751)
Robert W. Murphy (102800)
Xue-Juan Shen (587752)
Ya-Ping Zhang (53956)

April 2014

(a) Mt genomes; newly sequenced mt genomes denoted in bold. (b) Nuclear segments. Bayesian poster...

Maximum likelihood phylogeny of 164 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species

The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Syst. Biol

Mark Pagel

January 1999

A phylogeny describes the hierarchical pattern of descent of some group of species from a common anc...

Maximum Likelihood Phylogeny of the Western Mediterranean clade with all known ancient genomes.

Abstract

Extracted data

Maximum Likelihood Phylogeny of the Western Mediterranean clade with all known ancient genomes.

Abstract

Extracted data

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