a) Distribution of mean contig coverages of the ancient B. melitensis assembly. The dashed line indicates the mean coverage while the shaded rectangle indicates ±2 standard deviations from the mean. Arrows indicate contigs with a significantly greater read depth. b) GC bias correction results for the mapped contigs. c) Circos plot of the ten largest contigs in the ancient B. melitensis assembly. The outer ring indicates the mean read depth over a 0.5% sliding window whereas the inner ring is the GC content over the same period.</p
<p>The data sets are from <i>S. aureus</i> USA300 (A) and <i>S. aureus</i> MRSA252 (B) genomes. Read...
<p>We show the scatter plots of GC content and read coverage for <i>P.fluorescens</i> Pf0-1 Illumina...
Core SNP Bayesian phylogeny of the global B. melitensis genome diversity. The red bars at the nodes ...
Coverage plots for the first (NC_003317) and second (NC_003318) chromosomes in B. melitensis (GCF_00...
a) Determining the number of additional genes identified at each CV threshold. The dashed red line i...
<p>The surface area of each circle is proportional to the length of the contigs in bp, giving an int...
<p>(a) Percentage of genome covered by a given read depth. For each platform, the curve corresponds ...
<p>Distributions of coverage depths at error bases (red curves) are compared with those at all bases...
<p>Genes are plotted based on their GC bias [G<sub>3</sub>/(G<sub>3</sub>+C<sub>3</sub>)] and AU bia...
<p>The coverage within contigs is calculated by dividing the total number of base pairs contained in...
<p>Panel (a) is a boxplot of the distribution of the square-root normalized mean read depth across t...
Cumulative read coverage was visualized as Lorenz curves (A) and GC bias of the coverage was estimat...
<p>The top portion of the figure shows where the three amplicons lie and overlap across the mtgenome...
<p>The circles represent the contigs with the size of the square root of their length. Clusters of c...
<p>“Total Reads” indicates the number of 36-nt reads generated for each strain by Illumina GAII sequ...
<p>The data sets are from <i>S. aureus</i> USA300 (A) and <i>S. aureus</i> MRSA252 (B) genomes. Read...
<p>We show the scatter plots of GC content and read coverage for <i>P.fluorescens</i> Pf0-1 Illumina...
Core SNP Bayesian phylogeny of the global B. melitensis genome diversity. The red bars at the nodes ...
Coverage plots for the first (NC_003317) and second (NC_003318) chromosomes in B. melitensis (GCF_00...
a) Determining the number of additional genes identified at each CV threshold. The dashed red line i...
<p>The surface area of each circle is proportional to the length of the contigs in bp, giving an int...
<p>(a) Percentage of genome covered by a given read depth. For each platform, the curve corresponds ...
<p>Distributions of coverage depths at error bases (red curves) are compared with those at all bases...
<p>Genes are plotted based on their GC bias [G<sub>3</sub>/(G<sub>3</sub>+C<sub>3</sub>)] and AU bia...
<p>The coverage within contigs is calculated by dividing the total number of base pairs contained in...
<p>Panel (a) is a boxplot of the distribution of the square-root normalized mean read depth across t...
Cumulative read coverage was visualized as Lorenz curves (A) and GC bias of the coverage was estimat...
<p>The top portion of the figure shows where the three amplicons lie and overlap across the mtgenome...
<p>The circles represent the contigs with the size of the square root of their length. Clusters of c...
<p>“Total Reads” indicates the number of 36-nt reads generated for each strain by Illumina GAII sequ...
<p>The data sets are from <i>S. aureus</i> USA300 (A) and <i>S. aureus</i> MRSA252 (B) genomes. Read...
<p>We show the scatter plots of GC content and read coverage for <i>P.fluorescens</i> Pf0-1 Illumina...
Core SNP Bayesian phylogeny of the global B. melitensis genome diversity. The red bars at the nodes ...