In this thesis, we study two stochastic reaction diffusion models - the diffusion limited reaction model of Smoluchowski, and a second approach popularized by Doi. Both models treat molecules as points undergoing Brownian motion. The former represents chemical reactions between two reactants through the use of reactive boundary conditions, with two molecules reacting instantly upon reaching the boundary of a properly embedded open set, termed the reaction region (or more generally some fixed lower dimensional sub-manifold). The Doi model uses reaction potentials, supported in the reaction region, whereby two molecules react with a fixed probability per unit time, λ, upon entering the reaction region. The problem considered is that o...
actants is used to compute the time evolution of reactant concentrations. The stochastic algorithm i...
International audienceThis chapter aims at emphasizing the crucial role of partial reactivity of a c...
The mesoscopic reaction-diffusion master equation (RDME) is a popular modeling framework frequently ...
Stochastic reaction-diffusion models have become an important tool in studying how both noise in the...
Many cellular and subcellular biological processes can be described in terms of diffusing and chemic...
Many cellular and subcellular biological processes can be described in terms of diffusing and chemic...
Many cellular and subcellular biological processes can be described in terms of diffusing and chemic...
Abstract. A popular approach to modeling bimolecular reactions between diffusing molecules is throug...
A new algorithm for calculating the rate constants of diffusion-influenced reactions from Brownian-d...
Reactiondiffusion systems are mathematical models that describe how the concentration of one or more...
Several stochastic simulation algorithms (SSAs) have been recently proposed for modelling reaction-d...
We develop a Split Reactive Brownian Dynamics (SRBD) algorithm for particle simulations of reaction-...
A new Brownian dynamics simulation technique is presented for the calculation of the effective rate ...
The kinetics of bimolecular reactions in solution depends, among other factors, on intermolecular fo...
The second author's research leading to these results has received funding from the European Researc...
actants is used to compute the time evolution of reactant concentrations. The stochastic algorithm i...
International audienceThis chapter aims at emphasizing the crucial role of partial reactivity of a c...
The mesoscopic reaction-diffusion master equation (RDME) is a popular modeling framework frequently ...
Stochastic reaction-diffusion models have become an important tool in studying how both noise in the...
Many cellular and subcellular biological processes can be described in terms of diffusing and chemic...
Many cellular and subcellular biological processes can be described in terms of diffusing and chemic...
Many cellular and subcellular biological processes can be described in terms of diffusing and chemic...
Abstract. A popular approach to modeling bimolecular reactions between diffusing molecules is throug...
A new algorithm for calculating the rate constants of diffusion-influenced reactions from Brownian-d...
Reactiondiffusion systems are mathematical models that describe how the concentration of one or more...
Several stochastic simulation algorithms (SSAs) have been recently proposed for modelling reaction-d...
We develop a Split Reactive Brownian Dynamics (SRBD) algorithm for particle simulations of reaction-...
A new Brownian dynamics simulation technique is presented for the calculation of the effective rate ...
The kinetics of bimolecular reactions in solution depends, among other factors, on intermolecular fo...
The second author's research leading to these results has received funding from the European Researc...
actants is used to compute the time evolution of reactant concentrations. The stochastic algorithm i...
International audienceThis chapter aims at emphasizing the crucial role of partial reactivity of a c...
The mesoscopic reaction-diffusion master equation (RDME) is a popular modeling framework frequently ...