Ishimoto_Pkhd1KO_kidney_confocal_images

Supplementary file including original confocal images, CellProfiler pipeline used to analyze them and output with segmented images used for measuring tubes and cells. Additional information can be found in the corresponding manuscript: Supplementary analysis of snRNAseq data in the manuscript: Novel ARPKD mouse model with near complete deletion of Polycystic Kidney and Hepatic Disease 1 (Pkhd1) genomic locus has multiple phenotypes but no renal cysts Authors: Yu Ishimoto1,5, Luis F Menezes1,5,6, Fang Zhou1, Teruhiko Yoshida1, Taishi Komori2, Jiahe Qiu1, Marian F Young2, Huiyan Lu3, Svetlana Potapova3, Patricia Outeda4, Terry Watnick4, Gregory G Germino1, 6. Affiliations: 1 Kidney Disease Branch; National Institute of Diabetes and Digestive and Kidney Disease (NIDDK), National Institutes of Health (NIH), Bethesda, Maryland, USA 2 Molecular Biology of Bones and Teeth Section, Department of Health and Human Services (DHHS), National Institutes of Dental and Craniofacial Research (NIDCR), National Institutes of Health (NIH), Bethesda, Maryland, USA 3 Mouse Transgenic Core Facility, National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), National Institutes of Health (NIH), Bethesda, MD, USA 4 University of Maryland School of Medicine, Division of Nephrology, Baltimore, Maryland, USA. 5 These authors contributed equally to the study. 6 Co-Corresponding authors.