A multi-mode circuit implements the functionality of a limited number of circuits, called modes, of which at any given time only one needs to be realised. Using run-time reconfiguration (RTR) of an FPGA, all the modes can be time-multiplexed on the same reconfigurable region, requiring only an area that can contain the biggest mode. Typically, conventional run-time reconfiguration techniques generate a configuration of the reconfigurable region for every mode separately. This results in configurations that are bit-wise very different. Thus, in this case, many bits need to be changed in the configuration memory to switch between modes, leading to long reconfiguration times. In this paper we present a novel tool flow that retains the placemen...