Exact budget equations are derived for the coherent and stochastic contributions to the second-order structure function tensor. They extend the anisotropic generalised Kolmogorov equations (AGKE) by considering the coherent and stochastic parts of the Reynolds stress tensor, and are useful for the statistical description of turbulent flows with periodic or quasi-periodic features, like, for example, the alternate shedding after a bluff body. While the original AGKE describe production, transport, inter-component redistribution and dissipation of the Reynolds stresses in the combined space of scales and positions, the new equations, called AGKE, contain the phase as an additional independent variable, and describe the interplay among the mea...