We compute changes in the writhe of a polygonal space curve when one of the vertices is displaced. The resulting expressions can be used in simulations of supercoiled DNA. For Brownian dynamics simulations, the expressions can be used to eliminate the explicit twisting degree of freedom. For Monte Carlo simulations, they can be used in fast local moves. Preliminary Monte Carlo simulations using only such fast local moves show that these can be used to efficiently simulate small DNA supercoils
We used Monte Carlo simulations to investigate the conformational and thermodynamic properties of DN...
AbstractMetropolis Monte Carlo simulation is used to investigate the elasticity of torsionally stres...
A detailed protocol of molecular dynamics simulations of supercoiled DNA molecules that can be in ad...
We compute changes in the writhe of a polygonal space curve when one of the vertices is displaced. T...
The recently presented Brownian dynamics model for superhelical DNA is extended to include local cur...
DNA molecular center-lines designed from atomistic-resolution structures are compared for the evalua...
We develop two classes of Monte Carlo moves for efficient sampling of wormlike DNA chains that can h...
DNA supercoiling plays a role in genetic control by imposing torsional stress. This can induce writh...
DNA molecular center-lines designed from atomistic-resolution structures are compared for the evalua...
DNA supercoiling is a widespread phenomenon in biology. Here we introduce a coarse-grained DNA model...
We treat supercoiled DNA within a wormlike model with excluded volume. A modified Monte Carlo approa...
Despite its small stature, the bacteriophage virus for decades has puzzled those who\ud have sought ...
The recently presented Brownian dynamics model for superhelical DNA is extended to include local cur...
AbstractMonte Carlo simulations are used to study the effect of spontaneous (intrinsic) twist on the...
A new Fourier series representation of supercoiled DNA is employed in Langevin dynamics simulations ...
We used Monte Carlo simulations to investigate the conformational and thermodynamic properties of DN...
AbstractMetropolis Monte Carlo simulation is used to investigate the elasticity of torsionally stres...
A detailed protocol of molecular dynamics simulations of supercoiled DNA molecules that can be in ad...
We compute changes in the writhe of a polygonal space curve when one of the vertices is displaced. T...
The recently presented Brownian dynamics model for superhelical DNA is extended to include local cur...
DNA molecular center-lines designed from atomistic-resolution structures are compared for the evalua...
We develop two classes of Monte Carlo moves for efficient sampling of wormlike DNA chains that can h...
DNA supercoiling plays a role in genetic control by imposing torsional stress. This can induce writh...
DNA molecular center-lines designed from atomistic-resolution structures are compared for the evalua...
DNA supercoiling is a widespread phenomenon in biology. Here we introduce a coarse-grained DNA model...
We treat supercoiled DNA within a wormlike model with excluded volume. A modified Monte Carlo approa...
Despite its small stature, the bacteriophage virus for decades has puzzled those who\ud have sought ...
The recently presented Brownian dynamics model for superhelical DNA is extended to include local cur...
AbstractMonte Carlo simulations are used to study the effect of spontaneous (intrinsic) twist on the...
A new Fourier series representation of supercoiled DNA is employed in Langevin dynamics simulations ...
We used Monte Carlo simulations to investigate the conformational and thermodynamic properties of DN...
AbstractMetropolis Monte Carlo simulation is used to investigate the elasticity of torsionally stres...
A detailed protocol of molecular dynamics simulations of supercoiled DNA molecules that can be in ad...