ComputationalCryoEM/ASPIRE-Python: v0.10.1

ASPIRE v0.10.1 is a patch release focused on adding several API improvements, bug fixes, and CI updates. This release provides the following features: Synthetic volume generators (Legacy and compact Asymmetric, Cn, Dn, T, O) confuse based ASPIRE config Multi dimensional stack axis for Image and Volume Parallel and batched BFR and BFSR alignment Scale colorbar for Image.show utilities Implement and check top level imports (import aspire) Restores ability to use cufinufft via config NoiseAdder framework and updates Documentation and Logging: User configutation tutorial Dramatically reduced console log spam Replaced some logging with tqdm progress bars Support user/runtime logger and tqdm configuration Updated simulation docstring Docstring formatting Pipeline demo gallery Bug Fixes and Cleanup: Updates rotation convention to be counter-clockwise Real coefficient rotations Normalize background dtype Fourier Bessel zero finding cleanup im_translate and preprocessing cleanup/deprecation CTFEstimator and voltage_to_wavelength unit fixes CTF starfile output column name Unit test fixes for averagers Pytest parallel processing limits Added missing paramaterized test cases Gaussian 2D and 3D util cleanup Unified transpose and flip for Volume and Image covar2d ells mask bug fix Consistently use recent about_axis() and Volume.load() ImageSource.save() dict return Remove Micrograph and MrcStack in favor of ImageSource Consistent use of fft module Dtype updates (Basis, Simulation, Volume, CLOrient3D, nufft) Filter indices bug fix Migration to Image.Resolution from Image.res (via DeprecationWarning) Workaround for scipy==v0.10.0 2D interpolation importlib resources updates Systems/CI Updates: GPU CI Daily documentation build testing (develop) CI config and additional logging Disable ray on Azure for OSX and Windows Adds pytest-xdist plugin for developers Support building docs without running gallery Updates for latest scikit-learn release Began migration towards pure pytests tox v4 support Azure OSX 12 updates Github actions v3/v4 update