Summary of the demographic data and metadata of the samples that tested positive for SARS-CoV-2 and subjected to whole genome sequencing.

Table_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.pdf

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

SARS-CoV2 reference genome UCN20

Ar Gouilh Meriadeg
Leterrier Bryce
Estelle Leperchois
Sandrine Corbet
Astrid Vabret

May 2023

This genome is a majority consensus obtained from sequencing respiratory samples and first passage o...

Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches

Mutz, Pascal
Rochman, Nash D.
Wolf, Yuri I.
Faure, Guilhem
Zhang, Feng
Koonin, Eugene V.

November 2021

Supplementary Data Tables Table S1: Virus characteristics including abbreviation, family, order, t...

Description of COVID-19 PCR and SARS-CoV-2 serological tests results stratified by different participants’ demographics.

Fehintola Anthonia Ige (10954406)
Gregory Aigbe Ohihoin (17101909)
Kazeem Osuolale (17101912)
Adedamola Dada (17101915)
Ngozi Onyia (17101918)
Adeyemi Johnson (17101921)
Azuka Patrick Okwuraiwe (9969848)
Omoladun Odediran (17101924)
Gideon Liboro (9969860)
Maureen Aniedobe (12334189)
Sunday Mogaji (17101927)
Stephanie Ogechi Nwaiwu (17101930)
Ibukun Ruth Akande (17101933)
Rosemary Ajuma Audu (9969893)
Babatunde Lawal Salako (9969887)

October 2023

Description of COVID-19 PCR and SARS-CoV-2 serological tests results stratified by different partici...

Demographic data of the cohort of periodic donors, and their association with SARS-CoV-2 testing, SARS-CoV-2 positivity, and COVID-19 severe disease.

Chiara Marraccini (1698013)
Lucia Merolle (1802614)
Davide Schiroli (17427615)
Agnese Razzoli (17427618)
Gaia Gavioli (17427621)
Barbara Iotti (17427624)
Roberto Baricchi (17427627)
Marta Ottone (10007427)
Pamela Mancuso (8099804)
Paolo Giorgi Rossi (9311547)

November 2023

Demographic data of the cohort of periodic donors, and their association with SARS-CoV-2 testing, SA...

List of the 12 SARS-CoV-2 C1.1 lineage whole-genome assemblies and amino acid changes generated during this study.

Nalia Ismael (5664373)
Stephanie van Wyk (10057585)
Houriiyah Tegally (9681758)
Jennifer Giandhari (9543786)
James Emmanuel San (9543783)
Monika Moir (14724947)
Sureshnee Pillay (708115)
Christian Utpatel (199158)
Lavanya Singh (10765936)
Yeshnee Naidoo (12326810)
Upasana Ramphal (13001578)
Nédio Mabunda (679203)
Nuro Abílio (14724950)
Paulo Arnaldo (565927)
Joicymara Xavier (14724953)
Daniel Gyamfi Amoako (4164502)
Josie Everatt (12440718)
Yajna Ramphal (14724956)
Arisha Maharaj (14724959)
Leonardo de Araujo (14724962)
Ugochukwu J. Anyaneji (10765939)
Derek Tshiabuila (14724965)
Sofia Viegas (137658)
Richard Lessells (138505)
Susan Engelbrecht (427183)
Eduardo Gudo (3513530)
Ilesh Jani (563942)
Stefan Niemann (62805)
Eduan Wilkinson (532376)
Túlio de Oliveira (14724968)

March 2023

List of the 12 SARS-CoV-2 C1.1 lineage whole-genome assemblies and amino acid changes generated duri...

From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

Ortuño, Francisco M
Loucera, Carlos
Casimiro-Soriguer, Carlos S
de Salazar, Adolfo
Cheuca, Natalia
García, Federico
Perez-Florido, Javier
Dopazo, Joaquin

March 2021

Supplementary data for "From partial to whole genome imputation of SARS-CoV-2 for epidemiological su...

SARS-CoV-2 diagnostic testing rates determine the sensitivity of genomic surveillance programs

Han, Alvin X.
Toporowski, Amy
Sacks, Jilian A.
Perkins, Mark D.
Briand, Sylvie
van Kerkhove, Maria
Hannay, Emma
Carmona, Sergio
Rodriguez, Bill
Parker, Edyth
Nichols, Brooke E.
Russell, Colin A.

September 2022

Processed simulation data files for: SARS-CoV-2 diagnostic testing rates determine the sensitivity o...

S3 Fig -

Naila Shoaib (11261782)
Naila Noureen (9367721)
Rimsha Munir (3799555)
Farhad Ali Shah (9367724)
Noshaba Ishtiaq (11261785)
Nazia Jamil (596702)
Rida Batool (11261788)
Mohammad Khalid (94154)
Ihsan Khan (11261791)
Naser Iqbal (11261794)
Nousheen Zaidi (629103)

August 2021

(a) The age distribution of the SARS-CoV-2 positive patients analyzed for the presented study. (b) T...

Primers for whole genome sequencing of the Sars-Cov-2 virus

Yerbol Burashev

October 2022

Here is the primer sequence for amplification and sequencing of the whole genome of the Sars-Cov-2 v...

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. Washington et al.

G, K (via Mendeley Data)

March 2021

Number of positive tests, SGTF dropouts and B117 sequences at Helix from Oct 15, 2020 to Feb 19, 202...

Raw sequencing metrics from two different prep methods for obtaining SARS-CoV2 genomes

Megan L Folkerts

December 2020

Sequencing_metrics_IlluminaDNAprep.xlsx contains metrics used for the determination of SARS-CoV2 gen...

The distribution of SARS-CoV-2 S protein mutations detected in samples collected during four different periods between 2020 and 2021.

Mariane Daou (12239719)
Hussein Kannout (11653888)
Mariam Khalili (11653891)
Mohamed Almarei (6948389)
Mohamed Alhashami (13844505)
Zainab Alhalwachi (13844508)
Fatima Alshamsi (13844511)
Mohammad Tahseen Al Bataineh (9619565)
Mohd Azzam Kayasseh (11653894)
Abdulmajeed Al Khajeh (13844514)
Shadi W. Hasan (13844517)
Guan K. Tay (4516888)
Samuel F. Feng (11653906)
Dymitr Ruta (13844520)
Ahmed F. Yousef (10655445)
Habiba S. Alsafar (11653909)

September 2022

The distribution of SARS-CoV-2 S protein mutations detected in samples collected during four differe...

Image_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.jpeg

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

DataSheet_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.pdf

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

Table_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.pdf

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

SARS-CoV2 reference genome UCN20

Ar Gouilh Meriadeg
Leterrier Bryce
Estelle Leperchois
Sandrine Corbet
Astrid Vabret

May 2023

This genome is a majority consensus obtained from sequencing respiratory samples and first passage o...

Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches

Mutz, Pascal
Rochman, Nash D.
Wolf, Yuri I.
Faure, Guilhem
Zhang, Feng
Koonin, Eugene V.

November 2021

Supplementary Data Tables Table S1: Virus characteristics including abbreviation, family, order, t...

Description of COVID-19 PCR and SARS-CoV-2 serological tests results stratified by different participants’ demographics.

Fehintola Anthonia Ige (10954406)
Gregory Aigbe Ohihoin (17101909)
Kazeem Osuolale (17101912)
Adedamola Dada (17101915)
Ngozi Onyia (17101918)
Adeyemi Johnson (17101921)
Azuka Patrick Okwuraiwe (9969848)
Omoladun Odediran (17101924)
Gideon Liboro (9969860)
Maureen Aniedobe (12334189)
Sunday Mogaji (17101927)
Stephanie Ogechi Nwaiwu (17101930)
Ibukun Ruth Akande (17101933)
Rosemary Ajuma Audu (9969893)
Babatunde Lawal Salako (9969887)

October 2023

Description of COVID-19 PCR and SARS-CoV-2 serological tests results stratified by different partici...

Demographic data of the cohort of periodic donors, and their association with SARS-CoV-2 testing, SARS-CoV-2 positivity, and COVID-19 severe disease.

Chiara Marraccini (1698013)
Lucia Merolle (1802614)
Davide Schiroli (17427615)
Agnese Razzoli (17427618)
Gaia Gavioli (17427621)
Barbara Iotti (17427624)
Roberto Baricchi (17427627)
Marta Ottone (10007427)
Pamela Mancuso (8099804)
Paolo Giorgi Rossi (9311547)

November 2023

Demographic data of the cohort of periodic donors, and their association with SARS-CoV-2 testing, SA...

List of the 12 SARS-CoV-2 C1.1 lineage whole-genome assemblies and amino acid changes generated during this study.

Nalia Ismael (5664373)
Stephanie van Wyk (10057585)
Houriiyah Tegally (9681758)
Jennifer Giandhari (9543786)
James Emmanuel San (9543783)
Monika Moir (14724947)
Sureshnee Pillay (708115)
Christian Utpatel (199158)
Lavanya Singh (10765936)
Yeshnee Naidoo (12326810)
Upasana Ramphal (13001578)
Nédio Mabunda (679203)
Nuro Abílio (14724950)
Paulo Arnaldo (565927)
Joicymara Xavier (14724953)
Daniel Gyamfi Amoako (4164502)
Josie Everatt (12440718)
Yajna Ramphal (14724956)
Arisha Maharaj (14724959)
Leonardo de Araujo (14724962)
Ugochukwu J. Anyaneji (10765939)
Derek Tshiabuila (14724965)
Sofia Viegas (137658)
Richard Lessells (138505)
Susan Engelbrecht (427183)
Eduardo Gudo (3513530)
Ilesh Jani (563942)
Stefan Niemann (62805)
Eduan Wilkinson (532376)
Túlio de Oliveira (14724968)

March 2023

List of the 12 SARS-CoV-2 C1.1 lineage whole-genome assemblies and amino acid changes generated duri...

From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

Ortuño, Francisco M
Loucera, Carlos
Casimiro-Soriguer, Carlos S
de Salazar, Adolfo
Cheuca, Natalia
García, Federico
Perez-Florido, Javier
Dopazo, Joaquin

March 2021

Supplementary data for "From partial to whole genome imputation of SARS-CoV-2 for epidemiological su...

SARS-CoV-2 diagnostic testing rates determine the sensitivity of genomic surveillance programs

Han, Alvin X.
Toporowski, Amy
Sacks, Jilian A.
Perkins, Mark D.
Briand, Sylvie
van Kerkhove, Maria
Hannay, Emma
Carmona, Sergio
Rodriguez, Bill
Parker, Edyth
Nichols, Brooke E.
Russell, Colin A.

September 2022

Processed simulation data files for: SARS-CoV-2 diagnostic testing rates determine the sensitivity o...

S3 Fig -

Naila Shoaib (11261782)
Naila Noureen (9367721)
Rimsha Munir (3799555)
Farhad Ali Shah (9367724)
Noshaba Ishtiaq (11261785)
Nazia Jamil (596702)
Rida Batool (11261788)
Mohammad Khalid (94154)
Ihsan Khan (11261791)
Naser Iqbal (11261794)
Nousheen Zaidi (629103)

August 2021

(a) The age distribution of the SARS-CoV-2 positive patients analyzed for the presented study. (b) T...

Primers for whole genome sequencing of the Sars-Cov-2 virus

Yerbol Burashev

October 2022

Here is the primer sequence for amplification and sequencing of the whole genome of the Sars-Cov-2 v...

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. Washington et al.

G, K (via Mendeley Data)

March 2021

Number of positive tests, SGTF dropouts and B117 sequences at Helix from Oct 15, 2020 to Feb 19, 202...

Raw sequencing metrics from two different prep methods for obtaining SARS-CoV2 genomes

Megan L Folkerts

December 2020

Sequencing_metrics_IlluminaDNAprep.xlsx contains metrics used for the determination of SARS-CoV2 gen...

The distribution of SARS-CoV-2 S protein mutations detected in samples collected during four different periods between 2020 and 2021.

Mariane Daou (12239719)
Hussein Kannout (11653888)
Mariam Khalili (11653891)
Mohamed Almarei (6948389)
Mohamed Alhashami (13844505)
Zainab Alhalwachi (13844508)
Fatima Alshamsi (13844511)
Mohammad Tahseen Al Bataineh (9619565)
Mohd Azzam Kayasseh (11653894)
Abdulmajeed Al Khajeh (13844514)
Shadi W. Hasan (13844517)
Guan K. Tay (4516888)
Samuel F. Feng (11653906)
Dymitr Ruta (13844520)
Ahmed F. Yousef (10655445)
Habiba S. Alsafar (11653909)

September 2022

The distribution of SARS-CoV-2 S protein mutations detected in samples collected during four differe...

Image_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.jpeg

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

DataSheet_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.pdf

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

Table_1_Clinical characteristics of the host DNA-removed metagenomic next-generation sequencing technology for detecting SARS-CoV-2, revealing host local immune signaling and assisting genomic epidemiology.pdf

Sun Zhaoyang (14118600)
Song Guowei (14118603)
Pan Jing (447402)
Zhou Yundong (14118606)
Lu Xinhua (14118609)
Wei Muyun (14118612)
Ma Xiaowei (14118615)
Li Lixin (14118618)
Chen Xiaoying (14118621)

November 2022

BackgroundMetagenomic next-generation sequencing (mNGS) technology has been central in detecting inf...

SARS-CoV2 reference genome UCN20

Ar Gouilh Meriadeg
Leterrier Bryce
Estelle Leperchois
Sandrine Corbet
Astrid Vabret

May 2023

This genome is a majority consensus obtained from sequencing respiratory samples and first passage o...

Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches

Mutz, Pascal
Rochman, Nash D.
Wolf, Yuri I.
Faure, Guilhem
Zhang, Feng
Koonin, Eugene V.

November 2021

Supplementary Data Tables Table S1: Virus characteristics including abbreviation, family, order, t...

Summary of the demographic data and metadata of the samples that tested positive for SARS-CoV-2 and subjected to whole genome sequencing.

Abstract

Extracted data

Summary of the demographic data and metadata of the samples that tested positive for SARS-CoV-2 and subjected to whole genome sequencing.

Abstract

Extracted data

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