Ask
Search
My library
ORKG

ORKG Ask

Our mission is to organize scholarly knowledge and make it accessible to humans and machines.

About

About ORKG Ask
Report issue
Statistics
Contact

Legal

Terms of use
Data protection (sheet)
Imprint
Accessibility
License

Technical

We
open source
System status
Changelog
Frontend: v1.41.0
Backend: v1.13.4

We use cookies to provide a better user experience.

Data Protection

List of genes significantly regulated in the different contrasts discussed in the paper.

Maria Talmon (796396)
Marcella Percio (14725298)
Joyce Afrakoma Obeng (14725301)
Federico A. Ruffinatti (4506889)
Daniele Sola (14725304)
Pier Paolo Sainaghi (10176095)
Emanuela Bellis (14725307)
Stefano Cusinato (14725310)
Aurora Ianniello (14725313)
Luigia G. Fresu (8933444)

Publication date

March 2023

DOI

10.1371/journal.pone.0282564.s002

Publisher

Public Library of Science (PLoS)

Abstract

Namely: ABA—MTX, anti-TNF—MTX, TOCI—MTX, ABA—HD, anti-TNF—HD, TOCI—HD, MTX—HD. (XLSX)</p

Extracted data

Related items

List of fold changes of the top 30 genes out of 238 genes counter-regulated by AAT and Power Mix treatment in fat.

Maria Koulmanda (165099)
Manoj Bhasin (9831)
Zuheir Awdeh (165103)
Andi Qipo (165108)
Zhigang Fan (165112)
Dusan Hanidziar (165117)
Prabhakar Putheti (165122)
Hang Shi (120167)
Eva Csizuadia (165130)
Towia A. Libermann (93587)
Terry B. Strom (165135)

May 2012

<p>List of fold changes of the top 30 genes out of 238 genes counter-regulated by AAT and Power Mix ...

List of top 30 commonly regulated genes showing Up or Down regulation by TGF-β and areca nut treatment on HaCaT cells.

Imran Khan (109715)
Neeraj Kumar (109718)
Ila Pant (109721)
Sivakrishna Narra (109725)
Paturu Kondaiah (73230)

December 2012

<p>List of top 30 commonly regulated genes showing Up or Down regulation by TGF-β and areca nut trea...

Comparison of numbers of differentially expressed genes and average fold changes.

Jay Zhang (422679)

June 2013

<p>Shown are the number of differentially expressed genes and the average fold changes of regulated ...

List of genes with altered expression extracted from microarray analysis.

Masaya Nagaya (13851123)
Fumito Kanada (13851126)
Masaru Takashima (13851129)
Yoshihiro Takamura (3118158)
Masaru Inatani (3118155)
Masaya Oki (429220)

September 2022

Genes differentially regulated by either of the two Atm inhibitors shown in Fig 2 are indicated by “...

Number of genes differentially regulated compared to parental strains MGAS10870 (M3-WT) and MGAS2221 (M1-WT).

Nicola Horstmann (201711)
Chau Nguyen Tran (5917469)
Chelcy Brumlow (5917472)
Sruti DebRoy (159313)
Hui Yao (240607)
Graciela Nogueras Gonzalez (5917475)
Nishanth Makthal (5917478)
Muthiah Kumaraswami (201726)
Samuel A. Shelburne (251582)

November 2018

Number of genes differentially regulated compared to parental strains MGAS10870 (M3-WT) and MGAS2221...

List of genes with significant expression differences between control and SAP97-cKO mice.

Preetika Gupta (5504762)
Ogul E. Uner (5504759)
Soumyashant Nayak (5504756)
Gregory R. Grant (4109659)
Robert G. Kalb (328968)

July 2018

<p>List of genes with significant expression differences between control and SAP97-cKO mice.</p

List of top up-regulated (at least 10-fold change, 10 genes) and down-regulated (at least 5-fold change, 11 genes) across all comparisons.

Marzia Scortegagna (561529)
Hyungsoo Kim (561530)
Jian-Liang Li (561531)
Hang Yao (535023)
Laurence M. Brill (502816)
Jaeseok Han (561532)
Eric Lau (234495)
David Bowtell (17430)
Gabriel Haddad (561533)
Randal J. Kaufman (561534)
Ze'ev A. Ronai (129037)

May 2014

<p>List of top up-regulated (at least 10-fold change, 10 genes) and down-regulated (at least 5-fold ...

List of 70 genes whose expression levels changed in the three treatment samples.

Masaya Nagaya (13851123)
Risa Yamaoka (14164754)
Fumito Kanada (13851126)
Tamotsu Sawa (14164757)
Masaru Takashima (13851129)
Yoshihiro Takamura (3118158)
Masaru Inatani (3118155)
Masaya Oki (429220)

November 2022

Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...

Genes associated to the Tlr pathway: list of the statistically significant up and down-regulated genes in the MDF.

Angelo Pietro Femia (335950)
Alexander Swidsinski (290250)
Piero Dolara (102958)
Maddalena Salvadori (335952)
Amedeo Amedei (304811)
Giovanna Caderni (335953)

February 2013

a<p>Genes for which the comparison between the ΔCt of the MDF with that of the corresponding normal ...

Comparison of host gene expression profiles following infection with different pathogens

Daniel Wong (47386)
Daphne Bazopoulou (47387)
Nathalie Pujol (47388)
Nektarios Tavernarakis (47389)
Jonathan J Ewbank (36951)

December 2011

Expression levels are indicated by a color scale and represent normalized differences between infect...

Selected list of genes differentially regulated by SERCA2a (2-fold change).

Ioannis Karakikes (371271)
Maengjo Kim (371272)
Lahouaria Hadri (371273)
Susumu Sakata (371274)
Yezhou Sun (371275)
Weijia Zhang (79845)
Elie R. Chemaly (371276)
Roger J. Hajjar (142214)
Djamel Lebeche (371277)

February 2013

<p>Selected list of genes differentially regulated by SERCA2a (2-fold change).</p

List of unique genes which are up- and down-regulated in both sexes after a particular treatment.

Alexey Moskalev (514322)
Mikhail Shaposhnikov (514323)
Anastasia Snezhkina (514324)
Valeria Kogan (514325)
Ekaterina Plyusnina (514326)
Darya Peregudova (514327)
Nataliya Melnikova (514328)
Leonid Uroshlev (514329)
Sergey Mylnikov (514330)
Alexey Dmitriev (514331)
Sergey Plusnin (514332)
Peter Fedichev (514333)
Anna Kudryavtseva (514334)

January 2014

*<p>Gene names were obtained from <a href="http://flybase.org" target="_blank">http://flybase.org</a...

Gene clustering for 354 genes altered by MI.

Yue-Feng Chen (312996)
James V. Pottala (312998)
Nathan Y. Weltman (304303)
Xijin Ge (88024)
Olga V. Savinova (313001)
A. Martin Gerdes (304306)

February 2013

<p>a. Genes whose expression was increased by MI but reduced or normalized by T4 treatment; b. Genes...

A summary of genes upregulated and downregulated by distinct classes of antibiotics.

Aram Heo (646416)
Hyun-Jin Jang (646417)
Jung-Suk Sung (646418)
Woojun Park (122087)

October 2014

<p>(A) The percentages of up- and down-regulated genes under treatment with 4 antibiotics. (B) Venn-...

List of genes with differential expression in quiescent vs. proliferative HsFb.

Bo-Rui Chen (298785)
Huei-Hsuan Cheng (298786)
Wei-Chung Lin (298787)
Kai-Hsuan Wang (298788)
Jun-Yang Liou (154997)
Pei-Feng Chen (298789)
Kenneth K. Wu (154996)

February 2013

<p>List of genes with differential expression in quiescent vs. proliferative HsFb.</p

List of fold changes of the top 30 genes out of 238 genes counter-regulated by AAT and Power Mix treatment in fat.

Maria Koulmanda (165099)
Manoj Bhasin (9831)
Zuheir Awdeh (165103)
Andi Qipo (165108)
Zhigang Fan (165112)
Dusan Hanidziar (165117)
Prabhakar Putheti (165122)
Hang Shi (120167)
Eva Csizuadia (165130)
Towia A. Libermann (93587)
Terry B. Strom (165135)

May 2012

<p>List of fold changes of the top 30 genes out of 238 genes counter-regulated by AAT and Power Mix ...

List of top 30 commonly regulated genes showing Up or Down regulation by TGF-β and areca nut treatment on HaCaT cells.

Imran Khan (109715)
Neeraj Kumar (109718)
Ila Pant (109721)
Sivakrishna Narra (109725)
Paturu Kondaiah (73230)

December 2012

<p>List of top 30 commonly regulated genes showing Up or Down regulation by TGF-β and areca nut trea...

Comparison of numbers of differentially expressed genes and average fold changes.

Jay Zhang (422679)

June 2013

<p>Shown are the number of differentially expressed genes and the average fold changes of regulated ...

List of genes with altered expression extracted from microarray analysis.

Masaya Nagaya (13851123)
Fumito Kanada (13851126)
Masaru Takashima (13851129)
Yoshihiro Takamura (3118158)
Masaru Inatani (3118155)
Masaya Oki (429220)

September 2022

Genes differentially regulated by either of the two Atm inhibitors shown in Fig 2 are indicated by “...

Number of genes differentially regulated compared to parental strains MGAS10870 (M3-WT) and MGAS2221 (M1-WT).

Nicola Horstmann (201711)
Chau Nguyen Tran (5917469)
Chelcy Brumlow (5917472)
Sruti DebRoy (159313)
Hui Yao (240607)
Graciela Nogueras Gonzalez (5917475)
Nishanth Makthal (5917478)
Muthiah Kumaraswami (201726)
Samuel A. Shelburne (251582)

November 2018

Number of genes differentially regulated compared to parental strains MGAS10870 (M3-WT) and MGAS2221...

List of genes with significant expression differences between control and SAP97-cKO mice.

Preetika Gupta (5504762)
Ogul E. Uner (5504759)
Soumyashant Nayak (5504756)
Gregory R. Grant (4109659)
Robert G. Kalb (328968)

July 2018

<p>List of genes with significant expression differences between control and SAP97-cKO mice.</p

List of top up-regulated (at least 10-fold change, 10 genes) and down-regulated (at least 5-fold change, 11 genes) across all comparisons.

Marzia Scortegagna (561529)
Hyungsoo Kim (561530)
Jian-Liang Li (561531)
Hang Yao (535023)
Laurence M. Brill (502816)
Jaeseok Han (561532)
Eric Lau (234495)
David Bowtell (17430)
Gabriel Haddad (561533)
Randal J. Kaufman (561534)
Ze'ev A. Ronai (129037)

May 2014

<p>List of top up-regulated (at least 10-fold change, 10 genes) and down-regulated (at least 5-fold ...

List of 70 genes whose expression levels changed in the three treatment samples.

Masaya Nagaya (13851123)
Risa Yamaoka (14164754)
Fumito Kanada (13851126)
Tamotsu Sawa (14164757)
Masaru Takashima (13851129)
Yoshihiro Takamura (3118158)
Masaru Inatani (3118155)
Masaya Oki (429220)

November 2022

Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...

Genes associated to the Tlr pathway: list of the statistically significant up and down-regulated genes in the MDF.

Angelo Pietro Femia (335950)
Alexander Swidsinski (290250)
Piero Dolara (102958)
Maddalena Salvadori (335952)
Amedeo Amedei (304811)
Giovanna Caderni (335953)

February 2013

a<p>Genes for which the comparison between the ΔCt of the MDF with that of the corresponding normal ...

Comparison of host gene expression profiles following infection with different pathogens

Daniel Wong (47386)
Daphne Bazopoulou (47387)
Nathalie Pujol (47388)
Nektarios Tavernarakis (47389)
Jonathan J Ewbank (36951)

December 2011

Expression levels are indicated by a color scale and represent normalized differences between infect...

Selected list of genes differentially regulated by SERCA2a (2-fold change).

Ioannis Karakikes (371271)
Maengjo Kim (371272)
Lahouaria Hadri (371273)
Susumu Sakata (371274)
Yezhou Sun (371275)
Weijia Zhang (79845)
Elie R. Chemaly (371276)
Roger J. Hajjar (142214)
Djamel Lebeche (371277)

February 2013

<p>Selected list of genes differentially regulated by SERCA2a (2-fold change).</p

List of unique genes which are up- and down-regulated in both sexes after a particular treatment.

Alexey Moskalev (514322)
Mikhail Shaposhnikov (514323)
Anastasia Snezhkina (514324)
Valeria Kogan (514325)
Ekaterina Plyusnina (514326)
Darya Peregudova (514327)
Nataliya Melnikova (514328)
Leonid Uroshlev (514329)
Sergey Mylnikov (514330)
Alexey Dmitriev (514331)
Sergey Plusnin (514332)
Peter Fedichev (514333)
Anna Kudryavtseva (514334)

January 2014

*<p>Gene names were obtained from <a href="http://flybase.org" target="_blank">http://flybase.org</a...

Gene clustering for 354 genes altered by MI.

Yue-Feng Chen (312996)
James V. Pottala (312998)
Nathan Y. Weltman (304303)
Xijin Ge (88024)
Olga V. Savinova (313001)
A. Martin Gerdes (304306)

February 2013

<p>a. Genes whose expression was increased by MI but reduced or normalized by T4 treatment; b. Genes...

A summary of genes upregulated and downregulated by distinct classes of antibiotics.

Aram Heo (646416)
Hyun-Jin Jang (646417)
Jung-Suk Sung (646418)
Woojun Park (122087)

October 2014

<p>(A) The percentages of up- and down-regulated genes under treatment with 4 antibiotics. (B) Venn-...

List of genes with differential expression in quiescent vs. proliferative HsFb.

Bo-Rui Chen (298785)
Huei-Hsuan Cheng (298786)
Wei-Chung Lin (298787)
Kai-Hsuan Wang (298788)
Jun-Yang Liou (154997)
Pei-Feng Chen (298789)
Kenneth K. Wu (154996)

February 2013

<p>List of genes with differential expression in quiescent vs. proliferative HsFb.</p

List of fold changes of the top 30 genes out of 238 genes counter-regulated by AAT and Power Mix treatment in fat.

Maria Koulmanda (165099)
Manoj Bhasin (9831)
Zuheir Awdeh (165103)
Andi Qipo (165108)
Zhigang Fan (165112)
Dusan Hanidziar (165117)
Prabhakar Putheti (165122)
Hang Shi (120167)
Eva Csizuadia (165130)
Towia A. Libermann (93587)
Terry B. Strom (165135)

May 2012

<p>List of fold changes of the top 30 genes out of 238 genes counter-regulated by AAT and Power Mix ...

List of top 30 commonly regulated genes showing Up or Down regulation by TGF-β and areca nut treatment on HaCaT cells.

Imran Khan (109715)
Neeraj Kumar (109718)
Ila Pant (109721)
Sivakrishna Narra (109725)
Paturu Kondaiah (73230)

December 2012

<p>List of top 30 commonly regulated genes showing Up or Down regulation by TGF-β and areca nut trea...

Comparison of numbers of differentially expressed genes and average fold changes.

Jay Zhang (422679)

June 2013

<p>Shown are the number of differentially expressed genes and the average fold changes of regulated ...