Cytokines up- and down-regulated in HG-treated tubular cell media and annotated in Gene Ontology Biological Process (GO-BP) terms related to inflammatory and fibroblastic response.

Barbara Torsello (4594873)
Sofia De Marco (14676189)
Silvia Bombelli (14676192)
Ingrid Cifola (67205)
Ivana Morabito (14676195)
Lara Invernizzi (14676198)
Chiara Meregalli (14676201)
Nicola Zucchini (10657043)
Guido Strada (207421)
Roberto A. Perego (14676204)
Cristina Bianchi (4582636)

Open link

Publication date

February 2023

DOI

10.1371/journal.pone.0279655.t001

Publisher

Public Library of Science (PLoS)

Abstract

Cytokines up- and down-regulated in HG-treated tubular cell media and annotated in Gene Ontology Biological Process (GO-BP) terms related to inflammatory and fibroblastic response.</p

Extracted data

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Data Protection

Cytokines up- and down-regulated in HG-treated tubular cell media and annotated in Gene Ontology Biological Process (GO-BP) terms related to inflammatory and fibroblastic response.

Barbara Torsello (4594873)
Sofia De Marco (14676189)
Silvia Bombelli (14676192)
Ingrid Cifola (67205)
Ivana Morabito (14676195)
Lara Invernizzi (14676198)
Chiara Meregalli (14676201)
Nicola Zucchini (10657043)
Guido Strada (207421)
Roberto A. Perego (14676204)
Cristina Bianchi (4582636)

Open link

Publication date

February 2023

DOI

10.1371/journal.pone.0279655.t001

Publisher

Public Library of Science (PLoS)

Abstract

Cytokines up- and down-regulated in HG-treated tubular cell media and annotated in Gene Ontology Biological Process (GO-BP) terms related to inflammatory and fibroblastic response.</p

Extracted data

Viviane Balloy (17494)
Hugo Varet (816197)
Marie-Agnès Dillies (12748)
Caroline Proux (25940)
Bernd Jagla (561404)
Jean-Yves Coppée (841975)
Olivier Tabary (816198)
Harriet Corvol (313303)
Michel Chignard (17499)
Loïc Guillot (41929)

October 2015

Gene-ontology molecular-function categories downregulated in infected cystic-fibrosis cells compa...

Evaluation of TGF-β1 secretion and expression after HG treatment of primary tubular cell cultures, and effects of conditioned media of HG-treated tubular cells on murine fibroblast proliferation and migration.

Barbara Torsello (4594873)
Sofia De Marco (14676189)
Silvia Bombelli (14676192)
Ingrid Cifola (67205)
Ivana Morabito (14676195)
Lara Invernizzi (14676198)
Chiara Meregalli (14676201)
Nicola Zucchini (10657043)
Guido Strada (207421)
Roberto A. Perego (14676204)
Cristina Bianchi (4582636)

February 2023

(A) Quantification by ELISA of TGF-β1 secreted in conditioned medium of tubular cells cultured for 9...

Genes Significantly Downregulated (>1.5 fold, p<0.05) in HTM Cells Phagocytically Challenged Under Physiological Condition.

Kristine M. Porter (170824)
David L. Epstein (110556)
Paloma B. Liton (83745)

April 2012

Genes Significantly Downregulated (>1.5 fold, p<0.05) in HTM Cells Phagocytically Challenged Unde...

Genes Significantly Upregulated (>1.5 fold, p<0.05) in HTM Cells Phagocytically Challenged Under Physiological Conditions.

Kristine M. Porter (170824)
David L. Epstein (110556)
Paloma B. Liton (83745)

April 2012

Genes Significantly Upregulated (>1.5 fold, p<0.05) in HTM Cells Phagocytically Challenged Under ...

Enriched GO biological process terms for 119 up-regulated genes in HK2 cells (top 20 significantly enriched BP terms (p<0.01) were retrieved upstream towards its ancestors to level 4).

Krzysztof Wanic (386352)
Bozena Krolewski (386353)
Wenjun Ju (386354)
Grzegorz Placha (386355)
Monika A. Niewczas (386356)
William Walker (386357)
James H. Warram (386358)
Matthias Kretzler (135179)
Andrzej S. Krolewski (325062)

March 2013

Enriched GO biological process terms for 119 up-regulated genes in HK2 cells (top 20 significantl...

Enriched GO biological process terms for 194 down-regulated genes in HK2 cells (top 20 significantly enriched BP terms (P<0.01) were retrieved upstream towards its ancestors to level 4).

Krzysztof Wanic (386352)
Bozena Krolewski (386353)
Wenjun Ju (386354)
Grzegorz Placha (386355)
Monika A. Niewczas (386356)
William Walker (386357)
James H. Warram (386358)
Matthias Kretzler (135179)
Andrzej S. Krolewski (325062)

March 2013

Enriched GO biological process terms for 194 down-regulated genes in HK2 cells (top 20 significan...

Biological processes in ACCP+ and rheumatoid arthritis (RA) groups of up-regulated genes by Gene ontology (GO) analysis.

N. Macías-Segura (5018597)
J. E. Castañeda-Delgado (5018606)
Y. Bastian (5018591)
D. Santiago-Algarra (5018582)
J. D. Castillo-Ortiz (5018609)
A. L. Alemán-Navarro (5018618)
E. Jaime-Sánchez (5018585)
M. Gomez-Moreno (5018603)
C. A. Saucedo-Toral (5018615)
Edgar E. Lara-Ramírez (282094)
M. Zapata-Zuñiga (5018612)
L. Enciso-Moreno (5018579)
R. González-Amaro (5018594)
C. Ramos-Remus (5018588)
J. A. Enciso-Moreno (5018600)

March 2018

Biological processes in ACCP+ and rheumatoid arthritis (RA) groups of up-regulated genes by Gene ...

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-value < 0.05) among the genes over- and under-expressed in the StCo-StHi contrast detected using GSEA.

Pan Zhang (206408)
Justin S. Rhodes (210602)
Theodore Garland Jr. (350095)
Sam D. Perez (3366563)
Bruce R. Southey (19329)
Sandra L. Rodriguez-Zas (19332)

August 2018

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-v...

Up-regulated DEGs involved in the GO term of “inflammatory response” (GO: 0006954) within each cell type of H5N1 group and H9N2 group.

Manman Dai (6792296)
Sufang Zhu (4356760)
Zhihao An (17131868)
Bowen You (11671147)
Ziwei Li (191878)
Yongxiu Yao (229112)
Venugopal Nair (222225)
Ming Liao (123342)

October 2023

Up-regulated DEGs involved in the GO term of “inflammatory response” (GO: 0006954) within each cell ...

Biological processes (BP) GO terms represented in the list of transcripts down-regulated after DAPT treatment of P0 Lfng-GFP+cells that were also enriched in P1 Lfng-GFP+cells.

Juan C. Maass (276452)
Rende Gu (3383714)
Tiantian Cai (3383711)
Ying-Wooi Wan (243650)
Silvia C. Cantellano (3383702)
Joanna S. T. Asprer (507832)
Hongyuan Zhang (2358817)
Hsin-I Jen (3383705)
Renée K. Edlund (3383708)
Zhandong Liu (516336)
Andrew K. Groves (276455)

December 2016

Biological processes (BP) GO terms represented in the list of transcripts down-regulated after DA...

Gene-ontology molecular-function categories upregulated in infected cystic-fibrosis cells compared to CTRL cells.

Viviane Balloy (17494)
Hugo Varet (816197)
Marie-Agnès Dillies (12748)
Caroline Proux (25940)
Bernd Jagla (561404)
Jean-Yves Coppée (841975)
Olivier Tabary (816198)
Harriet Corvol (313303)
Michel Chignard (17499)
Loïc Guillot (41929)

October 2015

Gene-ontology molecular-function categories upregulated in infected cystic-fibrosis cells compare...

GO terms relevant to ECM homeostasis and proteolysis are significantly over-represented in HGFs stimulated with leptin and IL-1.

Rachel C. Williams (2143720)
Andrew J. Skelton (2143723)
Stephen M. Todryk (90851)
Andrew D. Rowan (412609)
Philip M. Preshaw (2143726)
John J. Taylor (2090110)

February 2016

GO terms relevant to ECM homeostasis and proteolysis are significantly over-represented in HGFs s...

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-value < 0.05) among the genes over-expressed in the CeCo-CeHi contrast detected using GSEA.

Pan Zhang (206408)
Justin S. Rhodes (210602)
Theodore Garland Jr. (350095)
Sam D. Perez (3366563)
Bruce R. Southey (19329)
Sandra L. Rodriguez-Zas (19332)

August 2018

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-v...

Gene-ontology molecular-function categories downregulated in infected cystic-fibrosis cells compared to CTRL cells.

Viviane Balloy (17494)
Hugo Varet (816197)
Marie-Agnès Dillies (12748)
Caroline Proux (25940)
Bernd Jagla (561404)
Jean-Yves Coppée (841975)
Olivier Tabary (816198)
Harriet Corvol (313303)
Michel Chignard (17499)
Loïc Guillot (41929)

October 2015

Gene-ontology molecular-function categories downregulated in infected cystic-fibrosis cells compa...

Barbara Torsello (4594873)
Sofia De Marco (14676189)
Silvia Bombelli (14676192)
Ingrid Cifola (67205)
Ivana Morabito (14676195)
Lara Invernizzi (14676198)
Chiara Meregalli (14676201)
Nicola Zucchini (10657043)
Guido Strada (207421)
Roberto A. Perego (14676204)
Cristina Bianchi (4582636)

February 2023

(A) Quantification by ELISA of TGF-β1 secreted in conditioned medium of tubular cells cultured for 9...

Enriched GO biological process terms for 119 up-regulated genes in HK2 cells (top 20 significantly enriched BP terms (p<0.01) were retrieved upstream towards its ancestors to level 4).

Krzysztof Wanic (386352)
Bozena Krolewski (386353)
Wenjun Ju (386354)
Grzegorz Placha (386355)
Monika A. Niewczas (386356)
William Walker (386357)
James H. Warram (386358)
Matthias Kretzler (135179)
Andrzej S. Krolewski (325062)

March 2013

Enriched GO biological process terms for 119 up-regulated genes in HK2 cells (top 20 significantl...

Enriched GO biological process terms for 194 down-regulated genes in HK2 cells (top 20 significantly enriched BP terms (P<0.01) were retrieved upstream towards its ancestors to level 4).

Krzysztof Wanic (386352)
Bozena Krolewski (386353)
Wenjun Ju (386354)
Grzegorz Placha (386355)
Monika A. Niewczas (386356)
William Walker (386357)
James H. Warram (386358)
Matthias Kretzler (135179)
Andrzej S. Krolewski (325062)

March 2013

Enriched GO biological process terms for 194 down-regulated genes in HK2 cells (top 20 significan...

Biological processes in ACCP+ and rheumatoid arthritis (RA) groups of up-regulated genes by Gene ontology (GO) analysis.

N. Macías-Segura (5018597)
J. E. Castañeda-Delgado (5018606)
Y. Bastian (5018591)
D. Santiago-Algarra (5018582)
J. D. Castillo-Ortiz (5018609)
A. L. Alemán-Navarro (5018618)
E. Jaime-Sánchez (5018585)
M. Gomez-Moreno (5018603)
C. A. Saucedo-Toral (5018615)
Edgar E. Lara-Ramírez (282094)
M. Zapata-Zuñiga (5018612)
L. Enciso-Moreno (5018579)
R. González-Amaro (5018594)
C. Ramos-Remus (5018588)
J. A. Enciso-Moreno (5018600)

March 2018

Biological processes in ACCP+ and rheumatoid arthritis (RA) groups of up-regulated genes by Gene ...

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-value < 0.05) among the genes over- and under-expressed in the StCo-StHi contrast detected using GSEA.

Pan Zhang (206408)
Justin S. Rhodes (210602)
Theodore Garland Jr. (350095)
Sam D. Perez (3366563)
Bruce R. Southey (19329)
Sandra L. Rodriguez-Zas (19332)

August 2018

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-v...

Up-regulated DEGs involved in the GO term of “inflammatory response” (GO: 0006954) within each cell type of H5N1 group and H9N2 group.

Manman Dai (6792296)
Sufang Zhu (4356760)
Zhihao An (17131868)
Bowen You (11671147)
Ziwei Li (191878)
Yongxiu Yao (229112)
Venugopal Nair (222225)
Ming Liao (123342)

October 2023

Up-regulated DEGs involved in the GO term of “inflammatory response” (GO: 0006954) within each cell ...

Biological processes (BP) GO terms represented in the list of transcripts down-regulated after DAPT treatment of P0 Lfng-GFP+cells that were also enriched in P1 Lfng-GFP+cells.

Juan C. Maass (276452)
Rende Gu (3383714)
Tiantian Cai (3383711)
Ying-Wooi Wan (243650)
Silvia C. Cantellano (3383702)
Joanna S. T. Asprer (507832)
Hongyuan Zhang (2358817)
Hsin-I Jen (3383705)
Renée K. Edlund (3383708)
Zhandong Liu (516336)
Andrew K. Groves (276455)

December 2016

Biological processes (BP) GO terms represented in the list of transcripts down-regulated after DA...

Gene-ontology molecular-function categories upregulated in infected cystic-fibrosis cells compared to CTRL cells.

Viviane Balloy (17494)
Hugo Varet (816197)
Marie-Agnès Dillies (12748)
Caroline Proux (25940)
Bernd Jagla (561404)
Jean-Yves Coppée (841975)
Olivier Tabary (816198)
Harriet Corvol (313303)
Michel Chignard (17499)
Loïc Guillot (41929)

October 2015

Gene-ontology molecular-function categories upregulated in infected cystic-fibrosis cells compare...

GO terms relevant to ECM homeostasis and proteolysis are significantly over-represented in HGFs stimulated with leptin and IL-1.

Rachel C. Williams (2143720)
Andrew J. Skelton (2143723)
Stephen M. Todryk (90851)
Andrew D. Rowan (412609)
Philip M. Preshaw (2143726)
John J. Taylor (2090110)

February 2016

GO terms relevant to ECM homeostasis and proteolysis are significantly over-represented in HGFs s...

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-value < 0.05) among the genes over-expressed in the CeCo-CeHi contrast detected using GSEA.

Pan Zhang (206408)
Justin S. Rhodes (210602)
Theodore Garland Jr. (350095)
Sam D. Perez (3366563)
Bruce R. Southey (19329)
Sandra L. Rodriguez-Zas (19332)

August 2018

Gene Ontology (GO) biological process (BP) and KEGG pathway categories enriched (FDR-adjusted P-v...

Gene-ontology molecular-function categories downregulated in infected cystic-fibrosis cells compared to CTRL cells.

Viviane Balloy (17494)
Hugo Varet (816197)
Marie-Agnès Dillies (12748)
Caroline Proux (25940)
Bernd Jagla (561404)
Jean-Yves Coppée (841975)
Olivier Tabary (816198)
Harriet Corvol (313303)
Michel Chignard (17499)
Loïc Guillot (41929)

October 2015

Gene-ontology molecular-function categories downregulated in infected cystic-fibrosis cells compa...

Barbara Torsello (4594873)
Sofia De Marco (14676189)
Silvia Bombelli (14676192)
Ingrid Cifola (67205)
Ivana Morabito (14676195)
Lara Invernizzi (14676198)
Chiara Meregalli (14676201)
Nicola Zucchini (10657043)
Guido Strada (207421)
Roberto A. Perego (14676204)
Cristina Bianchi (4582636)

February 2023

(A) Quantification by ELISA of TGF-β1 secreted in conditioned medium of tubular cells cultured for 9...

Cytokines up- and down-regulated in HG-treated tubular cell media and annotated in Gene Ontology Biological Process (GO-BP) terms related to inflammatory and fibroblastic response.

Abstract

Extracted data

Cytokines up- and down-regulated in HG-treated tubular cell media and annotated in Gene Ontology Biological Process (GO-BP) terms related to inflammatory and fibroblastic response.

Abstract

Extracted data

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