Description of all TE copies analyzed: assigned TE family, information about isolate of origin, position in the genome, niche and TE sequence characteristics.</p
(A) Phylogenetic tree of LTR retrotransposons based on the reverse transcriptase domain. (B) Genome-...
GenBank accession number information of sequences used in Tm-SPE phylogeny analysis.</p
(A) Absolute (left) and relative (right) fraction of autonomous and non-autonomous elements in each ...
<p>a) Histograms of the RPKM of TEs (left) and RNA elements, based on genomic reads. b) The empirica...
<p>Pedigrees of the four Tunisian families analyzed using the whole exome sequencing strategy.</p
Details of the complete genome sequences of ILTVs in GenBank used in this study.</p
Phylogenetic analysis based on the nucleotide sequence of VP1 gene of Egyptian isolates and other re...
Distribution of niche and TE copy characteristics: (A) Overlap of TE content, gene content and GC co...
Characteristics of the four sequenced DNA regions and the resulting combined matrix used for phyloge...
<p>Summary of five candidate variants with a consistent inheritance pattern detected by whole exome ...
<p>*genome has been sequenced previously</p><p>Details of isolates sequenced in current study.</p
<p>Sequence characteristics of the three DNA regions and their combinations in the studied <i>Solanu...
Details of the Gene Expression Omnibus (GEO) series included in this analysis.</p
Sequence variability analyses of the three DNA fragments analysed, considering the complete dataset ...
<p>Accession numbers, primer sequences and lengths of PCR amplified fragments are reported for the f...
(A) Phylogenetic tree of LTR retrotransposons based on the reverse transcriptase domain. (B) Genome-...
GenBank accession number information of sequences used in Tm-SPE phylogeny analysis.</p
(A) Absolute (left) and relative (right) fraction of autonomous and non-autonomous elements in each ...
<p>a) Histograms of the RPKM of TEs (left) and RNA elements, based on genomic reads. b) The empirica...
<p>Pedigrees of the four Tunisian families analyzed using the whole exome sequencing strategy.</p
Details of the complete genome sequences of ILTVs in GenBank used in this study.</p
Phylogenetic analysis based on the nucleotide sequence of VP1 gene of Egyptian isolates and other re...
Distribution of niche and TE copy characteristics: (A) Overlap of TE content, gene content and GC co...
Characteristics of the four sequenced DNA regions and the resulting combined matrix used for phyloge...
<p>Summary of five candidate variants with a consistent inheritance pattern detected by whole exome ...
<p>*genome has been sequenced previously</p><p>Details of isolates sequenced in current study.</p
<p>Sequence characteristics of the three DNA regions and their combinations in the studied <i>Solanu...
Details of the Gene Expression Omnibus (GEO) series included in this analysis.</p
Sequence variability analyses of the three DNA fragments analysed, considering the complete dataset ...
<p>Accession numbers, primer sequences and lengths of PCR amplified fragments are reported for the f...
(A) Phylogenetic tree of LTR retrotransposons based on the reverse transcriptase domain. (B) Genome-...
GenBank accession number information of sequences used in Tm-SPE phylogeny analysis.</p
(A) Absolute (left) and relative (right) fraction of autonomous and non-autonomous elements in each ...
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