Process discovery is a branch of process mining that by using event logs extracts the process model that describes the events’ behavior properly. Since, Heuristic process discovery algorithms are among the most significant and popular process discovery methods and due to the fact that the quality of outputs of these algorithms is heavily dependent on the quality of extracted dependency graph, in this paper for the first time, an approach to transform the problem of dependency graph discovery to a binary programming problem has been proposed and also, an objective function is introduced that simultaneously considers fitness and precision measures of output models. The weights dedicated to each of the measures are determined by means of a use...