COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.

A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

Niarakis, Anna
Ostaszewski, Marek
Mazein, Alexander
Kuperstein, Inna
Kutmon, Martina
Gillespie, Marc,
Funahashi, Akira
Acencio, Marcio,
Hemedan, Ahmed
Aichem, Michael
Klein, Karsten
Czauderna, Tobias
Burtscher, Felicia
Yamada, Takahiro,
Hiki, Yusuke
Hiroi, Noriko,
Hu, Finterly
Pham, Nhung
Ehrhart, Friederike
Willighagen, Egon,
Valdeolivas, Alberto
Dugourd, Aurelien
Messina, Francesco
Esteban-Medina, Marina
Pena-Chilet, Maria
Rian, Kinza
Soliman, Sylvain
Aghamiri, Sara,
Puniya, Bhanwar,
Naldi, Aurelien
Helikar, Tomas
Singh, Vidisha
Farinas Fernandez, Marco
Bermudez, Viviam
Tsirvouli, Eirini
Montagud, Arnau
Noel, Vincent
Ponce de Leon, Miguel
Maier, Dieter
Bauch, Angela
Gyori, Benjamin,
Bachman, John,
Luna, Agustin
Pinero, Janet
Furlong, Laura,
Balaur, Irina
Rougny, Adrien
Jarosz, Yohan
Overall, Rupert,
Phair, Robert
Perfetto, Livia
Matthews, Lisa
Rex, Devasahayam,
Orlic-Milacic, Marija
Monraz Gomez, Luis,
de Meulder, Bertrand
Ravel, Jean,
Jassal, Bijay
Satagopam, Venkata,
Wu, Guanming
Golebiewski, Martin
Gawron, Piotr
Calzone, Laurence
Beckmann, Jacques,
Evelo, Chris,
d'Eustachio, Peter
Schreiber, Falk
Saez-Rodriguez, Julio
Dopazo, Joaquin
Kuiper, Martin
Valencia, Alfonso
Wolkenhauer, Olaf
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

December 2022

The COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 I...

COVID-19 Disease Map:eng a community effort to encode knowledgeabout SARS-CoV-2 mechanisms

Ostaszewski Marek

December 2020

I'm presenting a large-scale community effort to build an open-access, interoperable, and computable...

COVID-19 Disease map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Ostaszewski, Marek
Mazein, Alexander
Gillespie, Marc E.
Kuperstein, Inna
Niarakis, Anna
Hermjakob, Henning
Pico, Alexander R.
Willighagen, Egon L.
Evelo, Chris T.
Hasenauer, Jan
Schreiber, Falk
Drager, Andreas
Demir, Emek
Wolkenhauer, Olaf
Furlong, Laura I.
Barillot, Emmanuel
Dopazo, Joaquin
Orta-Resendiz, Aurelio
Messina, Francesco
Valencia, Alfonso
Funahashi, Akira
Kitano, Hiroaki
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2020

CITATION: Ostaszewski, M. et al. 2020. COVID-19 Disease map, building a computational repository of ...

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.

Ostaszewski, M.
Mazein, A.
Gillespie, M.E.
Kuperstein, I.
Niarakis, A.
Hermjakob, H.
Pico, A.R.
Willighagen, E.L.
Evelo, C.T.
Hasenauer, J.
Schreiber, F.
Dräger, A.
Demir, E.
Wolkenhauer, O.
Furlong, L.I.
Barillot, E.
Dopazo, J.
Orta-Resendiz, A.
Messina, F.
Valencia, A.
Funahashi, A.
Kitano, H.
Auffray, C.
Balling, R.
Schneider, R.

January 2020

Researchers around the world join forces to reconstruct the molecular processes of the virus-host in...

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Ostaszewski, Marek
Mazein, Alexander
Gillespie, Marc E.
Kuperstein, Inna
Niarakis, Anna
Hermjakob, Henning
Pico, Alexander R.
Willighagen, Egon L.
Evelo, Chris T.
Hasenauer, Jan
Schreiber, Falk
Dräger, Andreas
Demir, Emek
Wolkenhauer, Olaf
Furlong, Laura I.
Barillot, Emmanuel
Dopazo, Joaquin
Orta-resendiz, Aurelio
Messina, Francesco
Valencia, Alfonso
Funahashi, Akira
Kitano, Hiroaki
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

May 2020

Researchers around the world join forces to reconstruct the molecular processes of the virus-host in...

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms

Ostaszewski, Marek
Niarakis, Anna
Mazein, Alexander
Kuperstein, Inna
Phair, Robert
Orta-Resendiz, Aurelio
Singh, Vidisha
Aghamiri, Sara Sadat
Acencio, Marcio Luis
Glaab, Enrico
Ruepp, Andreas
Fobo, Gisela
Montrone, Corinna
Brauner, Barbara
Frishman, Goar
Monraz Gomez, Luis Cristobal
Somers, Julia
Hoch, Matti
Kumar Gupta, Shailendra
Scheel, Julia
Borlinghaus, Hanna
Czauderna, Tobias
Schreiber, Falk
Montagud, Arnau
Ponce de Leon, Miguel
Funahashi, Akira
Hiki, Yusuke
Hiroi, Noriko
Yamada, Takahiro G
Drager, Andreas
Renz, Alina
Naveez, Muhammad
Bocskei, Zsolt
Messina, Francesco
Bornigen, Daniela
Fergusson, Liam
Conti, Marta
Rameil, Marius
Nakonecnij, Vanessa
Vanhoefer, Jakob
Schmiester, Leonard
Wang, Muying
Ackerman, Emily E
Shoemaker, Jason E
Zucker, Jeremy
Oxford, Kristie
Teuton, Jeremy
Kocakaya, Ebru
Summak, Gokce Yagmur
Hanspers, Kristina
Kutmon, Martina
Coort, Susan
Eijssen, Lars
Ehrhart, Friederike
Rex, Devasahayam Arokia Balaya
Slenter, Denise
Martens, Marvin
Pham, Nhung
Haw, Robin
Jassal, Bijay
Matthews, Lisa
Orlic-Milacic, Marija
Senff Ribeiro, Andrea
Rothfels, Karen
Shamovsky, Veronica
Stephan, Ralf
Sevilla, Cristoffer
Varusai, Thawfeek
Ravel, Jean-Marie
Fraser, Rupsha
Ortseifen, Vera
Marchesi, Silvia
Gawron, Piotr
Smula, Ewa
Heirendt, Laurent
Satagopam, Venkata
Wu, Guanming
Riutta, Anders
Golebiewski, Martin
Owen, Stuart
Goble, Carole
Hu, Xiaoming
Overall, Rupert W
Maier, Dieter
Bauch, Angela
Gyori, Benjamin M
Bachman, John A
Vega, Carlos
Groues, Valentin
Vazquez, Miguel
Porras, Pablo
Licata, Luana
Iannuccelli, Marta
Sacco, Francesca
Nesterova, Anastasia
Yuryev, Anton
de Waard, Anita
Turei, Denes
Luna, Augustin
Babur, Ozgun
Soliman, Sylvain
Valdeolivas, Alberto
Esteban-Medina, Marina
Pena-Chilet, Maria
Rian, Kinza
Helikar, Tomas
Puniya, Bhanwar Lal
Modos, Dezso
Treveil, Agatha
Olbei, Marton
De Meulder, Bertrand
Ballereau, Stephane
Dugourd, Aurelien
Naldi, Aurelien
Noel, Vincent
Calzone, Laurence
Sander, Chris
Demir, Emek
Korcsmaros, Tamas
Freeman, Tom C
Auge, Franck
Beckmann, Jacques S
Hasenauer, Jan
Wolkenhauer, Olaf
Wilighagen, Egon L
Pico, Alexander R
Evelo, Chris T
Gillespie, Marc E
Stein, Lincoln D
Hermjakob, Henning
D'Eustachio, Peter
Saez-Rodriguez, Julio
Dopazo, Joaquin
Valencia, Alfonso
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2021

Ostaszewski M, Niarakis A, Mazein A, et al. COVID19 Disease Map, a computational knowledge repositor...

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

Ostaszewski, Marek
Niarakis, Anna
Mazein, Alexander
Kuperstein, Inna
Phair, Robert
Orta-Resendiz, Aurelio
Singh, Vidisha
Aghamiri, Sara Sadat
Acencio, Marcio Luis
Glaab, Enrico
Ruepp, Andreas
Fobo, Gisela
Montrone, Corinna
Brauner, Barbara
Frishman, Goar
Monraz Gómez, Luis Cristóbal
Somers, Julia
Hoch, Matti
Kumar Gupta, Shailendra
Scheel, Julia
Borlinghaus, Hanna
Czauderna, Tobias
Schreiber, Falk
Montagud, Arnau
Ponce de Leon, Miguel
Funahashi, Akira
Hiki, Yusuke
Hiroi, Noriko
Yamada, Takahiro G.
Dräger, Andreas
Renz, Alina
Naveez, Muhammad
Bocskei, Zsolt
Messina, Francesco
Börnigen, Daniela
Fergusson, Liam
Conti, Marta
Rameil, Marius
Nakonecnij, Vanessa
Vanhoefer, Jakob
Schmiester, Leonard
Wang, Muying
Ackerman, Emily E.
Shoemaker, Jason E.
Zucker, Jeremy
Oxford, Kristie
Teuton, Jeremy
Kocakaya, Ebru
Summak, Gökçe Yağmur
Hanspers, Kristina
Kutmon, Martina
Coort, Susan
Eijssen, Lars
Ehrhart, Friederike
Rex, Devasahayam Arokia Balaya
Slenter, Denise
Martens, Marvin
Pham, Nhung
Haw, Robin
Jassal, Bijay
Matthews, Lisa
Orlic-Milacic, Marija
Senff Ribeiro, Andrea
Rothfels, Karen
Shamovsky, Veronica
Stephan, Ralf
Sevilla, Cristoffer
Varusai, Thawfeek
Ravel, Jean-Marie
Fraser, Rupsha
Ortseifen, Vera
Marchesi, Silvia
Gawron, Piotr
Smula, Ewa
Heirendt, Laurent
Satagopam, Venkata
Wu, Guanming
Riutta, Anders
Golebiewski, Martin
Owen, Stuart
Goble, Carole
Hu, Xiaoming
Overall, Rupert W.
Maier, Dieter
Bauch, Angela
Gyori, Benjamin M.
Bachman, John A.
Vega, Carlos
Groues, Valentin
Vazquez, Miguel
Porras, Pablo
Licata, Luana
Iannuccelli, Marta
Sacco, Francesca
Nesterova, Anastasia
Yuryev, Anton
de Waard, Anita
Turei, Denes
Luna, Augustin
Babur, Ozgun
Soliman, Sylvain
Valdeolivas, Alberto
Esteban-Medina, Marina
Peña-Chilet, Maria
Rian, Kinza
Helikar, Tomáš
Puniya, Bhanwar Lal
Modos, Dezso
Treveil, Agatha
Olbei, Marton
De Meulder, Bertrand
Ballereau, Stephane
Dugourd, Aurélien
Naldi, Aurélien
Noël, Vincent
Calzone, Laurence
Sander, Chris
Demir, Emek
Korcsmaros, Tamas
Freeman, Tom C.
Augé, Franck
Beckmann, Jacques S.
Hasenauer, Jan
Wolkenhauer, Olaf
Wilighagen, Egon L.
Pico, Alexander R.
Evelo, Chris T.
Gillespie, Marc E.
Stein, Lincoln D.
Hermjakob, Henning
D'Eustachio, Peter
Saez-Rodriguez, Julio
Dopazo, Joaquin
Valencia, Alfonso
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2021

peer reviewedWe need to effectively combine the knowledge from surging literature with complex datas...

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

Ostaszewski M.
Niarakis A.
Mazein A.
Kuperstein I.
Phair R.
Orta-Resendiz A.
Singh V.
Aghamiri S. S.
Acencio M. L.
Glaab E.
Ruepp A.
Fobo G.
Montrone C.
Brauner B.
Frishman G.
Monraz Gomez L. C.
Somers J.
Hoch M.
Kumar Gupta S.
Scheel J.
Borlinghaus H.
Czauderna T.
Schreiber F.
Montagud A.
Ponce de Leon M.
Funahashi A.
Hiki Y.
Hiroi N.
Yamada T. G.
Drager A.
Renz A.
Naveez M.
Bocskei Z.
Messina F.
Bornigen D.
Fergusson L.
Conti M.
Rameil M.
Nakonecnij V.
Vanhoefer J.
Schmiester L.
Wang M.
Ackerman E. E.
Shoemaker J. E.
Zucker J.
Oxford K.
Teuton J.
Kocakaya E.
Summak G. Y.
Hanspers K.
Kutmon M.
Coort S.
Eijssen L.
Ehrhart F.
Rex D. A. B.
Slenter D.
Martens M.
Pham N.
Haw R.
Jassal B.
Matthews L.
Orlic-Milacic M.
Senff Ribeiro A.
Rothfels K.
Shamovsky V.
Stephan R.
Sevilla C.
Varusai T.
Ravel J. -M.
Fraser R.
Ortseifen V.
Marchesi S.
Gawron P.
Smula E.
Heirendt L.
Satagopam V.
Wu G.
Riutta A.
Golebiewski M.
Owen S.
Goble C.
Hu X.
Overall R. W.
Maier D.
Bauch A.
Gyori B. M.
Bachman J. A.
Vega C.
Groues V.
Vazquez M.
Porras P.
Licata L.
Iannuccelli M.
Sacco F.
Nesterova A.
Yuryev A.
de Waard A.
Turei D.
Luna A.
Babur O.
Soliman S.
Valdeolivas A.
Esteban-Medina M.
Pena-Chilet M.
Rian K.
Helikar T.
Puniya B. L.
Modos D.
Treveil A.
Olbei M.
De Meulder B.
Ballereau S.
Dugourd A.
Naldi A.
Noel V.
Calzone L.
Sander C.
Demir E.
Korcsmaros T.
Freeman T. C.
Auge F.
Beckmann J. S.
Hasenauer J.
Wolkenhauer O.
Wilighagen E. L.
Pico A. R.
Evelo C. T.
Gillespie M. E.
Stein L. D.
Hermjakob H.
D'Eustachio P.
Saez-Rodriguez J.
Dopazo J.
Valencia A.
Kitano H.
Barillot E.
Auffray C.
Balling R.
Schneider R.

January 2021

We need to effectively combine the knowledge from surging literature with complex datasets to propos...

A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

Niarakis, Anna
Ostaszewski, Marek
Mazein, Alexander
Kuperstein, Inna
Kutmon, Martina
Gillespie, Marc,
Funahashi, Akira
Acencio, Marcio,
Hemedan, Ahmed
Aichem, Michael
Klein, Karsten
Czauderna, Tobias
Burtscher, Felicia
Yamada, Takahiro,
Hiki, Yusuke
Hiroi, Noriko,
Hu, Finterly
Pham, Nhung
Ehrhart, Friederike
Willighagen, Egon,
Valdeolivas, Alberto
Dugourd, Aurelien
Messina, Francesco
Esteban-Medina, Marina
Pena-Chilet, Maria
Rian, Kinza
Soliman, Sylvain
Aghamiri, Sara,
Puniya, Bhanwar,
Naldi, Aurelien
Helikar, Tomas
Singh, Vidisha
Farinas Fernandez, Marco
Bermudez, Viviam
Tsirvouli, Eirini
Montagud, Arnau
Noel, Vincent
Ponce de Leon, Miguel
Maier, Dieter
Bauch, Angela
Gyori, Benjamin,
Bachman, John,
Luna, Agustin
Pinero, Janet
Furlong, Laura,
Balaur, Irina
Rougny, Adrien
Jarosz, Yohan
Overall, Rupert,
Phair, Robert
Perfetto, Livia
Matthews, Lisa
Rex, Devasahayam,
Orlic-Milacic, Marija
Monraz Gomez, Luis,
de Meulder, Bertrand
Ravel, Jean,
Jassal, Bijay
Satagopam, Venkata,
Wu, Guanming
Golebiewski, Martin
Gawron, Piotr
Calzone, Laurence
Beckmann, Jacques,
Evelo, Chris,
d'Eustachio, Peter
Schreiber, Falk
Saez-Rodriguez, Julio
Dopazo, Joaquin
Kuiper, Martin
Valencia, Alfonso
Wolkenhauer, Olaf
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

December 2022

The COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 I...

COVID-19 Disease Map:eng a community effort to encode knowledgeabout SARS-CoV-2 mechanisms

Ostaszewski Marek

December 2020

I'm presenting a large-scale community effort to build an open-access, interoperable, and computable...

COVID-19 Disease map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Ostaszewski, Marek
Mazein, Alexander
Gillespie, Marc E.
Kuperstein, Inna
Niarakis, Anna
Hermjakob, Henning
Pico, Alexander R.
Willighagen, Egon L.
Evelo, Chris T.
Hasenauer, Jan
Schreiber, Falk
Drager, Andreas
Demir, Emek
Wolkenhauer, Olaf
Furlong, Laura I.
Barillot, Emmanuel
Dopazo, Joaquin
Orta-Resendiz, Aurelio
Messina, Francesco
Valencia, Alfonso
Funahashi, Akira
Kitano, Hiroaki
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2020

CITATION: Ostaszewski, M. et al. 2020. COVID-19 Disease map, building a computational repository of ...

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.

Ostaszewski, M.
Mazein, A.
Gillespie, M.E.
Kuperstein, I.
Niarakis, A.
Hermjakob, H.
Pico, A.R.
Willighagen, E.L.
Evelo, C.T.
Hasenauer, J.
Schreiber, F.
Dräger, A.
Demir, E.
Wolkenhauer, O.
Furlong, L.I.
Barillot, E.
Dopazo, J.
Orta-Resendiz, A.
Messina, F.
Valencia, A.
Funahashi, A.
Kitano, H.
Auffray, C.
Balling, R.
Schneider, R.

January 2020

Researchers around the world join forces to reconstruct the molecular processes of the virus-host in...

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Ostaszewski, Marek
Mazein, Alexander
Gillespie, Marc E.
Kuperstein, Inna
Niarakis, Anna
Hermjakob, Henning
Pico, Alexander R.
Willighagen, Egon L.
Evelo, Chris T.
Hasenauer, Jan
Schreiber, Falk
Dräger, Andreas
Demir, Emek
Wolkenhauer, Olaf
Furlong, Laura I.
Barillot, Emmanuel
Dopazo, Joaquin
Orta-resendiz, Aurelio
Messina, Francesco
Valencia, Alfonso
Funahashi, Akira
Kitano, Hiroaki
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

May 2020

Researchers around the world join forces to reconstruct the molecular processes of the virus-host in...

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms

Ostaszewski, Marek
Niarakis, Anna
Mazein, Alexander
Kuperstein, Inna
Phair, Robert
Orta-Resendiz, Aurelio
Singh, Vidisha
Aghamiri, Sara Sadat
Acencio, Marcio Luis
Glaab, Enrico
Ruepp, Andreas
Fobo, Gisela
Montrone, Corinna
Brauner, Barbara
Frishman, Goar
Monraz Gomez, Luis Cristobal
Somers, Julia
Hoch, Matti
Kumar Gupta, Shailendra
Scheel, Julia
Borlinghaus, Hanna
Czauderna, Tobias
Schreiber, Falk
Montagud, Arnau
Ponce de Leon, Miguel
Funahashi, Akira
Hiki, Yusuke
Hiroi, Noriko
Yamada, Takahiro G
Drager, Andreas
Renz, Alina
Naveez, Muhammad
Bocskei, Zsolt
Messina, Francesco
Bornigen, Daniela
Fergusson, Liam
Conti, Marta
Rameil, Marius
Nakonecnij, Vanessa
Vanhoefer, Jakob
Schmiester, Leonard
Wang, Muying
Ackerman, Emily E
Shoemaker, Jason E
Zucker, Jeremy
Oxford, Kristie
Teuton, Jeremy
Kocakaya, Ebru
Summak, Gokce Yagmur
Hanspers, Kristina
Kutmon, Martina
Coort, Susan
Eijssen, Lars
Ehrhart, Friederike
Rex, Devasahayam Arokia Balaya
Slenter, Denise
Martens, Marvin
Pham, Nhung
Haw, Robin
Jassal, Bijay
Matthews, Lisa
Orlic-Milacic, Marija
Senff Ribeiro, Andrea
Rothfels, Karen
Shamovsky, Veronica
Stephan, Ralf
Sevilla, Cristoffer
Varusai, Thawfeek
Ravel, Jean-Marie
Fraser, Rupsha
Ortseifen, Vera
Marchesi, Silvia
Gawron, Piotr
Smula, Ewa
Heirendt, Laurent
Satagopam, Venkata
Wu, Guanming
Riutta, Anders
Golebiewski, Martin
Owen, Stuart
Goble, Carole
Hu, Xiaoming
Overall, Rupert W
Maier, Dieter
Bauch, Angela
Gyori, Benjamin M
Bachman, John A
Vega, Carlos
Groues, Valentin
Vazquez, Miguel
Porras, Pablo
Licata, Luana
Iannuccelli, Marta
Sacco, Francesca
Nesterova, Anastasia
Yuryev, Anton
de Waard, Anita
Turei, Denes
Luna, Augustin
Babur, Ozgun
Soliman, Sylvain
Valdeolivas, Alberto
Esteban-Medina, Marina
Pena-Chilet, Maria
Rian, Kinza
Helikar, Tomas
Puniya, Bhanwar Lal
Modos, Dezso
Treveil, Agatha
Olbei, Marton
De Meulder, Bertrand
Ballereau, Stephane
Dugourd, Aurelien
Naldi, Aurelien
Noel, Vincent
Calzone, Laurence
Sander, Chris
Demir, Emek
Korcsmaros, Tamas
Freeman, Tom C
Auge, Franck
Beckmann, Jacques S
Hasenauer, Jan
Wolkenhauer, Olaf
Wilighagen, Egon L
Pico, Alexander R
Evelo, Chris T
Gillespie, Marc E
Stein, Lincoln D
Hermjakob, Henning
D'Eustachio, Peter
Saez-Rodriguez, Julio
Dopazo, Joaquin
Valencia, Alfonso
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2021

Ostaszewski M, Niarakis A, Mazein A, et al. COVID19 Disease Map, a computational knowledge repositor...

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

Ostaszewski, Marek
Niarakis, Anna
Mazein, Alexander
Kuperstein, Inna
Phair, Robert
Orta-Resendiz, Aurelio
Singh, Vidisha
Aghamiri, Sara Sadat
Acencio, Marcio Luis
Glaab, Enrico
Ruepp, Andreas
Fobo, Gisela
Montrone, Corinna
Brauner, Barbara
Frishman, Goar
Monraz Gómez, Luis Cristóbal
Somers, Julia
Hoch, Matti
Kumar Gupta, Shailendra
Scheel, Julia
Borlinghaus, Hanna
Czauderna, Tobias
Schreiber, Falk
Montagud, Arnau
Ponce de Leon, Miguel
Funahashi, Akira
Hiki, Yusuke
Hiroi, Noriko
Yamada, Takahiro G.
Dräger, Andreas
Renz, Alina
Naveez, Muhammad
Bocskei, Zsolt
Messina, Francesco
Börnigen, Daniela
Fergusson, Liam
Conti, Marta
Rameil, Marius
Nakonecnij, Vanessa
Vanhoefer, Jakob
Schmiester, Leonard
Wang, Muying
Ackerman, Emily E.
Shoemaker, Jason E.
Zucker, Jeremy
Oxford, Kristie
Teuton, Jeremy
Kocakaya, Ebru
Summak, Gökçe Yağmur
Hanspers, Kristina
Kutmon, Martina
Coort, Susan
Eijssen, Lars
Ehrhart, Friederike
Rex, Devasahayam Arokia Balaya
Slenter, Denise
Martens, Marvin
Pham, Nhung
Haw, Robin
Jassal, Bijay
Matthews, Lisa
Orlic-Milacic, Marija
Senff Ribeiro, Andrea
Rothfels, Karen
Shamovsky, Veronica
Stephan, Ralf
Sevilla, Cristoffer
Varusai, Thawfeek
Ravel, Jean-Marie
Fraser, Rupsha
Ortseifen, Vera
Marchesi, Silvia
Gawron, Piotr
Smula, Ewa
Heirendt, Laurent
Satagopam, Venkata
Wu, Guanming
Riutta, Anders
Golebiewski, Martin
Owen, Stuart
Goble, Carole
Hu, Xiaoming
Overall, Rupert W.
Maier, Dieter
Bauch, Angela
Gyori, Benjamin M.
Bachman, John A.
Vega, Carlos
Groues, Valentin
Vazquez, Miguel
Porras, Pablo
Licata, Luana
Iannuccelli, Marta
Sacco, Francesca
Nesterova, Anastasia
Yuryev, Anton
de Waard, Anita
Turei, Denes
Luna, Augustin
Babur, Ozgun
Soliman, Sylvain
Valdeolivas, Alberto
Esteban-Medina, Marina
Peña-Chilet, Maria
Rian, Kinza
Helikar, Tomáš
Puniya, Bhanwar Lal
Modos, Dezso
Treveil, Agatha
Olbei, Marton
De Meulder, Bertrand
Ballereau, Stephane
Dugourd, Aurélien
Naldi, Aurélien
Noël, Vincent
Calzone, Laurence
Sander, Chris
Demir, Emek
Korcsmaros, Tamas
Freeman, Tom C.
Augé, Franck
Beckmann, Jacques S.
Hasenauer, Jan
Wolkenhauer, Olaf
Wilighagen, Egon L.
Pico, Alexander R.
Evelo, Chris T.
Gillespie, Marc E.
Stein, Lincoln D.
Hermjakob, Henning
D'Eustachio, Peter
Saez-Rodriguez, Julio
Dopazo, Joaquin
Valencia, Alfonso
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2021

peer reviewedWe need to effectively combine the knowledge from surging literature with complex datas...

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

Ostaszewski M.
Niarakis A.
Mazein A.
Kuperstein I.
Phair R.
Orta-Resendiz A.
Singh V.
Aghamiri S. S.
Acencio M. L.
Glaab E.
Ruepp A.
Fobo G.
Montrone C.
Brauner B.
Frishman G.
Monraz Gomez L. C.
Somers J.
Hoch M.
Kumar Gupta S.
Scheel J.
Borlinghaus H.
Czauderna T.
Schreiber F.
Montagud A.
Ponce de Leon M.
Funahashi A.
Hiki Y.
Hiroi N.
Yamada T. G.
Drager A.
Renz A.
Naveez M.
Bocskei Z.
Messina F.
Bornigen D.
Fergusson L.
Conti M.
Rameil M.
Nakonecnij V.
Vanhoefer J.
Schmiester L.
Wang M.
Ackerman E. E.
Shoemaker J. E.
Zucker J.
Oxford K.
Teuton J.
Kocakaya E.
Summak G. Y.
Hanspers K.
Kutmon M.
Coort S.
Eijssen L.
Ehrhart F.
Rex D. A. B.
Slenter D.
Martens M.
Pham N.
Haw R.
Jassal B.
Matthews L.
Orlic-Milacic M.
Senff Ribeiro A.
Rothfels K.
Shamovsky V.
Stephan R.
Sevilla C.
Varusai T.
Ravel J. -M.
Fraser R.
Ortseifen V.
Marchesi S.
Gawron P.
Smula E.
Heirendt L.
Satagopam V.
Wu G.
Riutta A.
Golebiewski M.
Owen S.
Goble C.
Hu X.
Overall R. W.
Maier D.
Bauch A.
Gyori B. M.
Bachman J. A.
Vega C.
Groues V.
Vazquez M.
Porras P.
Licata L.
Iannuccelli M.
Sacco F.
Nesterova A.
Yuryev A.
de Waard A.
Turei D.
Luna A.
Babur O.
Soliman S.
Valdeolivas A.
Esteban-Medina M.
Pena-Chilet M.
Rian K.
Helikar T.
Puniya B. L.
Modos D.
Treveil A.
Olbei M.
De Meulder B.
Ballereau S.
Dugourd A.
Naldi A.
Noel V.
Calzone L.
Sander C.
Demir E.
Korcsmaros T.
Freeman T. C.
Auge F.
Beckmann J. S.
Hasenauer J.
Wolkenhauer O.
Wilighagen E. L.
Pico A. R.
Evelo C. T.
Gillespie M. E.
Stein L. D.
Hermjakob H.
D'Eustachio P.
Saez-Rodriguez J.
Dopazo J.
Valencia A.
Kitano H.
Barillot E.
Auffray C.
Balling R.
Schneider R.

January 2021

We need to effectively combine the knowledge from surging literature with complex datasets to propos...

A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

Niarakis, Anna
Ostaszewski, Marek
Mazein, Alexander
Kuperstein, Inna
Kutmon, Martina
Gillespie, Marc,
Funahashi, Akira
Acencio, Marcio,
Hemedan, Ahmed
Aichem, Michael
Klein, Karsten
Czauderna, Tobias
Burtscher, Felicia
Yamada, Takahiro,
Hiki, Yusuke
Hiroi, Noriko,
Hu, Finterly
Pham, Nhung
Ehrhart, Friederike
Willighagen, Egon,
Valdeolivas, Alberto
Dugourd, Aurelien
Messina, Francesco
Esteban-Medina, Marina
Pena-Chilet, Maria
Rian, Kinza
Soliman, Sylvain
Aghamiri, Sara,
Puniya, Bhanwar,
Naldi, Aurelien
Helikar, Tomas
Singh, Vidisha
Farinas Fernandez, Marco
Bermudez, Viviam
Tsirvouli, Eirini
Montagud, Arnau
Noel, Vincent
Ponce de Leon, Miguel
Maier, Dieter
Bauch, Angela
Gyori, Benjamin,
Bachman, John,
Luna, Agustin
Pinero, Janet
Furlong, Laura,
Balaur, Irina
Rougny, Adrien
Jarosz, Yohan
Overall, Rupert,
Phair, Robert
Perfetto, Livia
Matthews, Lisa
Rex, Devasahayam,
Orlic-Milacic, Marija
Monraz Gomez, Luis,
de Meulder, Bertrand
Ravel, Jean,
Jassal, Bijay
Satagopam, Venkata,
Wu, Guanming
Golebiewski, Martin
Gawron, Piotr
Calzone, Laurence
Beckmann, Jacques,
Evelo, Chris,
d'Eustachio, Peter
Schreiber, Falk
Saez-Rodriguez, Julio
Dopazo, Joaquin
Kuiper, Martin
Valencia, Alfonso
Wolkenhauer, Olaf
Kitano, Hiroaki
Barillot, Emmanuel
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

December 2022

The COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 I...

COVID-19 Disease Map:eng a community effort to encode knowledgeabout SARS-CoV-2 mechanisms

Ostaszewski Marek

December 2020

I'm presenting a large-scale community effort to build an open-access, interoperable, and computable...

COVID-19 Disease map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Ostaszewski, Marek
Mazein, Alexander
Gillespie, Marc E.
Kuperstein, Inna
Niarakis, Anna
Hermjakob, Henning
Pico, Alexander R.
Willighagen, Egon L.
Evelo, Chris T.
Hasenauer, Jan
Schreiber, Falk
Drager, Andreas
Demir, Emek
Wolkenhauer, Olaf
Furlong, Laura I.
Barillot, Emmanuel
Dopazo, Joaquin
Orta-Resendiz, Aurelio
Messina, Francesco
Valencia, Alfonso
Funahashi, Akira
Kitano, Hiroaki
Auffray, Charles
Balling, Rudi
Schneider, Reinhard

January 2020

CITATION: Ostaszewski, M. et al. 2020. COVID-19 Disease map, building a computational repository of ...

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.

Abstract

Extracted data

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.

Abstract

Extracted data

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