Shannon index across V regions and reference databases in mock community samples analyzed with the CutPrimers-based pipeline.

Average sequences per V region comparing CutPrimers versus Cutadapt (Forward Primer Amplicons Only and Forward + Reverse Primer Amplicons).

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

V: Variable region. Reads are presented as the average absolute number of reads and the percentage o...

Shannon diversity collector curves.

Paul Andres Cardenas (304157)
Philip J. Cooper (218309)
Michael J. Cox (175111)
Martha Chico (270482)
Carlos Arias (304158)
Miriam F. Moffatt (175135)
William Osmond Cookson (304159)

February 2013

Multiple rarefaction curves were collated from each sample’s Shannon diversity index. The graphic...

Alpha diversity of the 3 groups.

Xiuying Zhang (56160)
Dongqian Shen (450656)
Zhiwei Fang (77598)
Zhuye Jie (450657)
Xinmin Qiu (450658)
Chunfang Zhang (7405)
Yingli Chen (383063)
Linong Ji (131708)

August 2013

The Shannon index (left panel) and Chao1 index (right panel) were computed for all 121 subjects. ...

Overall community structure similarities and differences in mock samples analyzed with the CutPrimers-based pipeline.

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

A. Principal Components Analysis plot of all evenly spaced mock community samples reduced to one poi...

Overall mock community agreement with expected abundance using CutPrimers.

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

A. Comparison of Bray-Curtis distance in the evenly spaced mock community samples using the CutPrime...

A comparison of the Shannon diversity indices for each methodology.

Benjamin C. Smith (153295)
Thomas McAndrew (153296)
Zigui Chen (153298)
Ariana Harari (153301)
David M. Barris (153305)
Shankar Viswanathan (153309)
Ana Cecilia Rodriguez (106109)
Phillip Castle (153316)
Rolando Herrero (106155)
Mark Schiffman (106112)
Robert D. Burk (35757)

July 2012

The Shannon diversity index (H’) was calculated based on the genus-level classification ta...

Shannon diversity index of fecal samples and reactors of PolyFermS models.

Sophie Fehlbaum (824936)
Christophe Chassard (139905)
Martina C. Haug (824937)
Candice Fourmestraux (824938)
Muriel Derrien (112299)
Christophe Lacroix (35954)

November 2015

The Shannon index was assessed in fecal donors 2 and 3, all reactors of model 2 and reactors IR, ...

Shannon diversity index (h) of the four different microbial communities averaged per zone.

Henk Bolhuis (62487)
Lucas Fillinger (587207)
Lucas J. Stal (395715)

May 2013

Shannon diversity index (h) of the four different microbial communities averaged per zone.</p

Shannon index analysis.

Sebastian Hunter (16806480)
Erica Flaten (16806483)
Charisse Petersen (6368963)
Judit Gervain (524952)
Janet F. Werker (7846796)
Laurel J. Trainor (9349727)
Brett B. Finlay (16806486)

August 2023

Functional diversity analysis using Shannon index comparing those who were unsuccessful versus succe...

Shannon diversity indices of the three patients at the genus level from meta-sequencing data.

Laetitia Bossa (3510950)
Kimberly Kline (363042)
Diane McDougald (143296)
Bonsan Bonne Lee (4117030)
Scott A. Rice (143316)

June 2017

Shannon diversity indices of the three patients at the genus level from meta-sequencing data.</p

Chao1 and Shannon indices for different cutoff distances (0.01, 0.03 and 0.05) and for different group of samples.

Georgios Oikonomou (126552)
Vinicius Silva Machado (126556)
Carlos Santisteban (126559)
Ynte Hein Schukken (126562)
Rodrigo Carvalho Bicalho (126564)

October 2012

Chao1 and Shannon indices for different cutoff distances (0.01, 0.03 and 0.05) and for different ...

Box plots representing comparison between the diversity indices (Chao, Shannon and Simpson) for Cluster-1a, Cluster-1b and Cluster-2.

Disha Tandon (680562)
Mohammed Monzoorul Haque (825263)
Saravanan R. (5071685)
Shafiq Shaikh (5071682)
Sriram P. (5071688)
Ashok Kumar Dubey (5071679)
Sharmila S. Mande (176619)

April 2018

Box plots representing comparison between the diversity indices (Chao, Shannon and Simpson) for C...

Alpha- and beta-diversity comparison.

Mu-Biao Liu (483072)
Su-Rong Xu (483073)
Yan He (116705)
Guan-Hua Deng (483074)
Hua-Fang Sheng (188412)
Xue-Mei Huang (483075)
Cai-Yan Ouyang (483076)
Hong-Wei Zhou (188423)

November 2013

(a) Comparison of the Shannon index of NC, VVC, BV/VVC, and BV using a one-way ANOVA (p<0.05). (b...

Comparison of the Shannon diversity index and the PD whole tree logistic according to the histopathological diagnosis group.

Astride Audirac-Chalifour (3172566)
Kirvis Torres-Poveda (3153699)
Margarita Bahena-Román (3172581)
Juan Téllez-Sosa (429748)
Jesús Martínez-Barnetche (429756)
Bernardo Cortina-Ceballos (3172569)
Guillermina López-Estrada (3172575)
Karina Delgado-Romero (3172563)
Ana I. Burguete-García (3172578)
David Cantú (3172572)
Alejandro García-Carrancá (65968)
Vicente Madrid-Marina (3153696)

April 2016

The boxplots show the distribution of the H’ (bit units) and PD values across all the samples.</p

Average alpha diversity in the analyzed groups, expressed as antilog of Shannon’s index.

Mateus Laguardia-Nascimento (830108)
Kelly Moreira Grillo Ribeiro Branco (830109)
Marcela Ribeiro Gasparini (830110)
Silvia Giannattasio-Ferraz (830111)
Laura Rabelo Leite (830112)
Flávio Marcos Gomes Araujo (830113)
Anna Christina de Matos Salim (830114)
Jacques Robert Nicoli (830115)
Guilherme Corrêa de Oliveira (830116)
Edel Figueiredo Barbosa-Stancioli (830117)

November 2015

NPH—Non-pregnant Heifers, PH—Pregnant Heifers, NPC—Non-pregnant Cows, PC—Pregnant Cows. Different...

Average sequences per V region comparing CutPrimers versus Cutadapt (Forward Primer Amplicons Only and Forward + Reverse Primer Amplicons).

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

V: Variable region. Reads are presented as the average absolute number of reads and the percentage o...

Shannon diversity collector curves.

Paul Andres Cardenas (304157)
Philip J. Cooper (218309)
Michael J. Cox (175111)
Martha Chico (270482)
Carlos Arias (304158)
Miriam F. Moffatt (175135)
William Osmond Cookson (304159)

February 2013

Multiple rarefaction curves were collated from each sample’s Shannon diversity index. The graphic...

Alpha diversity of the 3 groups.

Xiuying Zhang (56160)
Dongqian Shen (450656)
Zhiwei Fang (77598)
Zhuye Jie (450657)
Xinmin Qiu (450658)
Chunfang Zhang (7405)
Yingli Chen (383063)
Linong Ji (131708)

August 2013

The Shannon index (left panel) and Chao1 index (right panel) were computed for all 121 subjects. ...

Overall community structure similarities and differences in mock samples analyzed with the CutPrimers-based pipeline.

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

A. Principal Components Analysis plot of all evenly spaced mock community samples reduced to one poi...

Overall mock community agreement with expected abundance using CutPrimers.

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

A. Comparison of Bray-Curtis distance in the evenly spaced mock community samples using the CutPrime...

A comparison of the Shannon diversity indices for each methodology.

Benjamin C. Smith (153295)
Thomas McAndrew (153296)
Zigui Chen (153298)
Ariana Harari (153301)
David M. Barris (153305)
Shankar Viswanathan (153309)
Ana Cecilia Rodriguez (106109)
Phillip Castle (153316)
Rolando Herrero (106155)
Mark Schiffman (106112)
Robert D. Burk (35757)

July 2012

The Shannon diversity index (H’) was calculated based on the genus-level classification ta...

Shannon diversity index of fecal samples and reactors of PolyFermS models.

Sophie Fehlbaum (824936)
Christophe Chassard (139905)
Martina C. Haug (824937)
Candice Fourmestraux (824938)
Muriel Derrien (112299)
Christophe Lacroix (35954)

November 2015

The Shannon index was assessed in fecal donors 2 and 3, all reactors of model 2 and reactors IR, ...

Shannon diversity index (h) of the four different microbial communities averaged per zone.

Henk Bolhuis (62487)
Lucas Fillinger (587207)
Lucas J. Stal (395715)

May 2013

Shannon diversity index (h) of the four different microbial communities averaged per zone.</p

Shannon index analysis.

Sebastian Hunter (16806480)
Erica Flaten (16806483)
Charisse Petersen (6368963)
Judit Gervain (524952)
Janet F. Werker (7846796)
Laurel J. Trainor (9349727)
Brett B. Finlay (16806486)

August 2023

Functional diversity analysis using Shannon index comparing those who were unsuccessful versus succe...

Shannon diversity indices of the three patients at the genus level from meta-sequencing data.

Laetitia Bossa (3510950)
Kimberly Kline (363042)
Diane McDougald (143296)
Bonsan Bonne Lee (4117030)
Scott A. Rice (143316)

June 2017

Shannon diversity indices of the three patients at the genus level from meta-sequencing data.</p

Chao1 and Shannon indices for different cutoff distances (0.01, 0.03 and 0.05) and for different group of samples.

Georgios Oikonomou (126552)
Vinicius Silva Machado (126556)
Carlos Santisteban (126559)
Ynte Hein Schukken (126562)
Rodrigo Carvalho Bicalho (126564)

October 2012

Chao1 and Shannon indices for different cutoff distances (0.01, 0.03 and 0.05) and for different ...

Box plots representing comparison between the diversity indices (Chao, Shannon and Simpson) for Cluster-1a, Cluster-1b and Cluster-2.

Disha Tandon (680562)
Mohammed Monzoorul Haque (825263)
Saravanan R. (5071685)
Shafiq Shaikh (5071682)
Sriram P. (5071688)
Ashok Kumar Dubey (5071679)
Sharmila S. Mande (176619)

April 2018

Box plots representing comparison between the diversity indices (Chao, Shannon and Simpson) for C...

Alpha- and beta-diversity comparison.

Mu-Biao Liu (483072)
Su-Rong Xu (483073)
Yan He (116705)
Guan-Hua Deng (483074)
Hua-Fang Sheng (188412)
Xue-Mei Huang (483075)
Cai-Yan Ouyang (483076)
Hong-Wei Zhou (188423)

November 2013

(a) Comparison of the Shannon index of NC, VVC, BV/VVC, and BV using a one-way ANOVA (p<0.05). (b...

Comparison of the Shannon diversity index and the PD whole tree logistic according to the histopathological diagnosis group.

Astride Audirac-Chalifour (3172566)
Kirvis Torres-Poveda (3153699)
Margarita Bahena-Román (3172581)
Juan Téllez-Sosa (429748)
Jesús Martínez-Barnetche (429756)
Bernardo Cortina-Ceballos (3172569)
Guillermina López-Estrada (3172575)
Karina Delgado-Romero (3172563)
Ana I. Burguete-García (3172578)
David Cantú (3172572)
Alejandro García-Carrancá (65968)
Vicente Madrid-Marina (3153696)

April 2016

The boxplots show the distribution of the H’ (bit units) and PD values across all the samples.</p

Average alpha diversity in the analyzed groups, expressed as antilog of Shannon’s index.

Mateus Laguardia-Nascimento (830108)
Kelly Moreira Grillo Ribeiro Branco (830109)
Marcela Ribeiro Gasparini (830110)
Silvia Giannattasio-Ferraz (830111)
Laura Rabelo Leite (830112)
Flávio Marcos Gomes Araujo (830113)
Anna Christina de Matos Salim (830114)
Jacques Robert Nicoli (830115)
Guilherme Corrêa de Oliveira (830116)
Edel Figueiredo Barbosa-Stancioli (830117)

November 2015

NPH—Non-pregnant Heifers, PH—Pregnant Heifers, NPC—Non-pregnant Cows, PC—Pregnant Cows. Different...

Average sequences per V region comparing CutPrimers versus Cutadapt (Forward Primer Amplicons Only and Forward + Reverse Primer Amplicons).

Katherine A. Maki (7931942)
Brian Wolff (262223)
Leonardo Varuzza (83103)
Stefan J. Green (295667)
Jennifer J. Barb (9153014)

January 2023

V: Variable region. Reads are presented as the average absolute number of reads and the percentage o...

Shannon diversity collector curves.

Paul Andres Cardenas (304157)
Philip J. Cooper (218309)
Michael J. Cox (175111)
Martha Chico (270482)
Carlos Arias (304158)
Miriam F. Moffatt (175135)
William Osmond Cookson (304159)

February 2013

Multiple rarefaction curves were collated from each sample’s Shannon diversity index. The graphic...

Alpha diversity of the 3 groups.

Xiuying Zhang (56160)
Dongqian Shen (450656)
Zhiwei Fang (77598)
Zhuye Jie (450657)
Xinmin Qiu (450658)
Chunfang Zhang (7405)
Yingli Chen (383063)
Linong Ji (131708)

August 2013

The Shannon index (left panel) and Chao1 index (right panel) were computed for all 121 subjects. ...

Shannon index across V regions and reference databases in mock community samples analyzed with the CutPrimers-based pipeline.

Abstract

Extracted data

Shannon index across V regions and reference databases in mock community samples analyzed with the CutPrimers-based pipeline.

Abstract

Extracted data

Related items

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