vgteam/vg: Second DOI release for pantranscriptomics paper

greenelab/vae_pancancer: Initial Development Release

Greg Way

July 2017

The release incorporates an end-to-end training and evaluating of a variational autoencoder applied ...

GenCoG: A DSL-Based Approach to Generating Computation Graphs for TVM Testing

Anonymized

February 2023

Code repository of ISSTA'23 submission "GenCoG: A DSL-Based Approach to Generating Computation Graph...

gwastro/confusion-noise-3g: prd-paper (updated Fig.7)

Shichao Wu

April 2023

The second release version for the accepted PRD paper, add a correction for Fig. 7. Please cite this...

vgteam/vg: Second DOI release for pantranscriptomics paper

Adam Novak
Erik Garrison
Jordan Eizenga
Glenn Hickey
Xian Chang
Jouni Siren
Eric T. Dawson
Jonas Andreas Sibbesen
Susanna
Toshiyuki Yokoyama
JervenBolleman
Emily Kobayashi
Michael R. Crusoe
Mike Lin
Orion Buske
Hajime Suzuki
yoheirosen
Youri Hoogstrate
AlexanderSavelyev
Jean Monlong
Mariia Zueva
Richard Durbin
Kevin Ying
Stephen Hwang
Vanessa Tan
Charles Markello
Mike Keehan
Toshiaki Katayama
Abram Connelly
Alex Jironkin

June 2022

This is a non-versioned release created in order to make a stable DOI for the source code to support...

vgteam/vg: DOI release for pantranscriptomics paper

Adam Novak
Erik Garrison
Jordan Eizenga
Glenn Hickey
Xian Chang
Eric T. Dawson
Jouni Siren
Jonas Andreas Sibbesen
Susanna Morin
Toshiyuki Yokoyama
JervenBolleman
Emily Kobayashi
Michael R. Crusoe
Mike Lin
Orion Buske
Hajime Suzuki
yoheirosen
Youri Hoogstrate
AlexanderSavelyev
Jean Monlong
Mariia Zueva
Richard Durbin
Kevin Ying
Vanessa Tan
Charles Markello
Mike Keehan
Toshiaki Katayama
Abram Connelly
Alex Jironkin
Allison Penner Regier

December 2021

This is a non-versioned release created in order to make a stable DOI for the source code to support...

eriqande/genoscapeRtools: First release for DOI

Eric C. Anderson

August 2017

Tagging the current state of it to have a DOI for the WIFL genomic vulnerability paper

vgteam/sv-genotyping-paper: Code repository for "Genotyping structural variants in pangenome graphs using the vg toolkit"

Jean Monlong
Glenn Hickey
David Heller

May 2019

This repository contains the commands and scripts used for Genotyping structural variants in pangeno...

vgteam/sv-genotyping-paper: Revised code repository for "Genotyping structural variants in pangenome graphs using the vg toolkit"

Glenn Hickey
Jean Monlong
David Heller

October 2019

This repository contains the commands and scripts used for the revised version of our manuscript Gen...

pauwiersma/GHMGGM: Release for preprint

Pau Wiersma

March 2022

Files and code accompanying the Pau Wiersma et al. preprint at HESS (2022). The code can be found a...

HybSeqPipeline: First DOI Release

Matt Johnson

October 2014

Many bugfixes have been made, most critically the bug which was adding each read twice for each gene...

pyigm/pyigm: Initial release for publications

J. Xavier Prochaska
Nicolas Tejos
cwotta
jnburchett
Michele Fumagalli
marijana777
John O'Meara
Jessica Werk
Marc
mneeleman
kheegan

November 2017

This is the first release of pyigm to give it a DOI and thereby enable it to be cited. It is a comb...

DASDAE/dascore: v0.0.7

Derrick Chambers
eileenrmartin
Ge Jin
Abdul Hafiz Saeed Issah

November 2022

This is the first release with a DOI attached to it. Doing this so it can be cited in a paper

hoefer-lab/challenges_hematopoiesis: doi_publication

agreco92

December 2022

Release to obtain DOI for publication purposes Full Changelog: https://github.com/hoefer-lab/challen...

Software and Products for "Pangenomics enables genotyping known structural variants in 5,202 diverse genomes"

Jouni Sirén
Jean Monlong
Xian Chang
Adam M. Novak
Jordan M. Eizenga
Charles Markello
Jonas A. Sibbesen
Glenn Hickey
Pi-Chuan Chang
Andrew Carroll
Namrata Gupta
Stacey Gabriel
Thomas W. Blackwell
Aakrosh Ratan
Kent D. Taylor
Stephen S. Rich
Jerome I. Rotter
David Haussler
Erik Garrison
Benedict Paten

September 2021

This archive contains software source code and containers used in the paper "Pangenomics enables gen...

ssefick/StreamMetabolism: StreamMetabolism Update and DOI release

Stephen Sefick

September 2016

This release represents an update to documentation and code. This version is being released to get ...

greenelab/vae_pancancer: Initial Development Release

Greg Way

July 2017

The release incorporates an end-to-end training and evaluating of a variational autoencoder applied ...

GenCoG: A DSL-Based Approach to Generating Computation Graphs for TVM Testing

Anonymized

February 2023

Code repository of ISSTA'23 submission "GenCoG: A DSL-Based Approach to Generating Computation Graph...

gwastro/confusion-noise-3g: prd-paper (updated Fig.7)

Shichao Wu

April 2023

The second release version for the accepted PRD paper, add a correction for Fig. 7. Please cite this...

vgteam/vg: Second DOI release for pantranscriptomics paper

Adam Novak
Erik Garrison
Jordan Eizenga
Glenn Hickey
Xian Chang
Jouni Siren
Eric T. Dawson
Jonas Andreas Sibbesen
Susanna
Toshiyuki Yokoyama
JervenBolleman
Emily Kobayashi
Michael R. Crusoe
Mike Lin
Orion Buske
Hajime Suzuki
yoheirosen
Youri Hoogstrate
AlexanderSavelyev
Jean Monlong
Mariia Zueva
Richard Durbin
Kevin Ying
Stephen Hwang
Vanessa Tan
Charles Markello
Mike Keehan
Toshiaki Katayama
Abram Connelly
Alex Jironkin

June 2022

This is a non-versioned release created in order to make a stable DOI for the source code to support...

vgteam/vg: DOI release for pantranscriptomics paper

Adam Novak
Erik Garrison
Jordan Eizenga
Glenn Hickey
Xian Chang
Eric T. Dawson
Jouni Siren
Jonas Andreas Sibbesen
Susanna Morin
Toshiyuki Yokoyama
JervenBolleman
Emily Kobayashi
Michael R. Crusoe
Mike Lin
Orion Buske
Hajime Suzuki
yoheirosen
Youri Hoogstrate
AlexanderSavelyev
Jean Monlong
Mariia Zueva
Richard Durbin
Kevin Ying
Vanessa Tan
Charles Markello
Mike Keehan
Toshiaki Katayama
Abram Connelly
Alex Jironkin
Allison Penner Regier

December 2021

This is a non-versioned release created in order to make a stable DOI for the source code to support...

eriqande/genoscapeRtools: First release for DOI

Eric C. Anderson

August 2017

Tagging the current state of it to have a DOI for the WIFL genomic vulnerability paper

vgteam/sv-genotyping-paper: Code repository for "Genotyping structural variants in pangenome graphs using the vg toolkit"

Jean Monlong
Glenn Hickey
David Heller

May 2019

This repository contains the commands and scripts used for Genotyping structural variants in pangeno...

vgteam/sv-genotyping-paper: Revised code repository for "Genotyping structural variants in pangenome graphs using the vg toolkit"

Glenn Hickey
Jean Monlong
David Heller

October 2019

This repository contains the commands and scripts used for the revised version of our manuscript Gen...

pauwiersma/GHMGGM: Release for preprint

Pau Wiersma

March 2022

Files and code accompanying the Pau Wiersma et al. preprint at HESS (2022). The code can be found a...

HybSeqPipeline: First DOI Release

Matt Johnson

October 2014

Many bugfixes have been made, most critically the bug which was adding each read twice for each gene...

pyigm/pyigm: Initial release for publications

J. Xavier Prochaska
Nicolas Tejos
cwotta
jnburchett
Michele Fumagalli
marijana777
John O'Meara
Jessica Werk
Marc
mneeleman
kheegan

November 2017

This is the first release of pyigm to give it a DOI and thereby enable it to be cited. It is a comb...

DASDAE/dascore: v0.0.7

Derrick Chambers
eileenrmartin
Ge Jin
Abdul Hafiz Saeed Issah

November 2022

This is the first release with a DOI attached to it. Doing this so it can be cited in a paper

hoefer-lab/challenges_hematopoiesis: doi_publication

agreco92

December 2022

Release to obtain DOI for publication purposes Full Changelog: https://github.com/hoefer-lab/challen...

Software and Products for "Pangenomics enables genotyping known structural variants in 5,202 diverse genomes"

Jouni Sirén
Jean Monlong
Xian Chang
Adam M. Novak
Jordan M. Eizenga
Charles Markello
Jonas A. Sibbesen
Glenn Hickey
Pi-Chuan Chang
Andrew Carroll
Namrata Gupta
Stacey Gabriel
Thomas W. Blackwell
Aakrosh Ratan
Kent D. Taylor
Stephen S. Rich
Jerome I. Rotter
David Haussler
Erik Garrison
Benedict Paten

September 2021

This archive contains software source code and containers used in the paper "Pangenomics enables gen...

ssefick/StreamMetabolism: StreamMetabolism Update and DOI release

Stephen Sefick

September 2016

This release represents an update to documentation and code. This version is being released to get ...

greenelab/vae_pancancer: Initial Development Release

Greg Way

July 2017

The release incorporates an end-to-end training and evaluating of a variational autoencoder applied ...

GenCoG: A DSL-Based Approach to Generating Computation Graphs for TVM Testing

Anonymized

February 2023

Code repository of ISSTA'23 submission "GenCoG: A DSL-Based Approach to Generating Computation Graph...

gwastro/confusion-noise-3g: prd-paper (updated Fig.7)

Shichao Wu

April 2023

The second release version for the accepted PRD paper, add a correction for Fig. 7. Please cite this...

vgteam/vg: Second DOI release for pantranscriptomics paper

Abstract

Extracted data

vgteam/vg: Second DOI release for pantranscriptomics paper

Abstract

Extracted data

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