PredictiveEcology/reproducible: v0.2.5

Known issues: https://github.com/PredictiveEcology/reproducible/issues version 0.2.5 Dependency changes Added remotes to Imports and removed devtools New features New value possible for options(reproducible.useCache = 'overwrite'), which allows use of Cache in cases where the function call has an entry in the cacheRepo, will purge it and add the output of the current call instead. New option reproducible.inputPaths (default NULL) and reproducible.inputPathsRecursive (default FALSE), which will be used in prepInputs as possible directory sources (searched recursively or not) for files being downloaded/extracted/prepared. This allows the using of local copies of files in (an)other location(s) instead of downloading them. If local location does not have the required files, it will proceed to download so there is little cost in setting this option. If files do exist on local system, the function will attempt to use a hardlink before making a copy. dlGoogle() now sets options(httr_oob_default = TRUE) if using Rstudio Server. Files in CHECKSUMS now sorted alphabetically. Checksums can now have a CHECKSUMS.txt file located in a different place than the destinationPath Attempt to select raster resampling method based on raster type if no method supplied (#63, @ianmseddy) projectInputs new function assessDataTypeGDAL, used in postProcess, to identify smallest datatype for large Raster* objects passed to GDAL system call when masking and reprojecting large Raster objects, enact gdalwarp system call if raster::canProcessInMemory(x,4) = FALSE for faster and memory-safe processing better handling of various data types in Raster objects, including factor rasters Bug fixes Work around internally inside extractFromArchive for large (>2GB) zip files. In the R help manual, unzip fails for zip files >2GB. This uses a system call if the zip file is too large and fails using base::unzip. Work around for raster::getData issues. Speed up of Cache() when deeply nested, due to grep(sys.calls(), ...) that would take long and hang. Bugfix for preProcess(url = NULL) (#65, @tati-micheletti) Improved memory performance of clearCache (#67), especially for large Raster objects that are stored as binary R files (i.e., .rda) Other minor bugfixes Other changes Deal with new raster package changes in development version of raster package Added checks for float point number issues in raster resolutions produced by raster::projectRaster .robustDigest now does not include Cache-added attributes Additonal tests for preProcess() (#68, @tati-micheletti) Many new unit tests written, which caught several minor bug