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Gene Ontology (GO) analysis of RNA-seq data.

Yi Chen (38576)
Tianze Wu (5213024)
Chengbin Yang (1488706)
Mingzhu Lu (14159936)
Zhenxia Chen (1472293)
Mingli Deng (536343)
Yu Jia (128864)
Yongtai Yang (1472281)
Xiaofeng Liu (35910)
Hongyan Wang (41596)
Yun Ling (178318)
Lei Lu (318582)
Yaming Zhou (1472290)

Publication date

November 2022

DOI

10.1371/journal.pone.0277893.s004

Publisher

Public Library of Science (PLoS)

Abstract

The top ten significantly enriched biological processes (BP), cell component (CC), molecule function (MF) are shown. (TIF)</p

Extracted data

Topics

Related items

The classifications of transcripts according to Gene Ontology (GO) terms.

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March 2012

<p>The classification counts are shown for each of the first tier terms of the three GO database dom...

The gene ontology (GO) identified by functional analyses.

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<p>Gene ontology was performed using the Database for Annotation, Visualization and Integrated Disco...

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December 2023

Overview of GO terms in (A) HW2004 and (B) C306. BP refers to Biological Process, MF to Molecular Fu...

Gene ontology (GO) enrichment analysis for differentially regulated mRNAs.

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Yuan Shen (194742)
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<p>(A) GO analysis of mRNAs according to biological process. (B) GO analysis of mRNAs according to c...

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Mark F. Richardson (109910)
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<p>The top 10 represented GO terms for each of the GO categories: Biological Process, Molecular Func...

Gene ontology (GO) enrichment analysis for differentially expressed genes.

Shuyan Ma (690922)
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<p>GO analysis provides a controlled vocabulary to describe differentially expressed transcript attr...

Gene ontology enrichment analysis of the top 200 genes.

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Claudia Moebius (17879860)
Marc Bickle (51929)
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January 2024

Out of 1732 genes/proteins, the 200 genes/proteins with the highest weight (estimated using POPLS-DA...

Gene ontology (GO) analysis of differentially expressed proteins.

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November 2013

<p>GO annotations are presented by category: A) biological process B) cellular components C) molecul...

Gene Ontology (GO) analysis to categorize the Receptivity Associated Genes (RAGs) according to A) molecular functions B) biological processes C) cellular components.

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Sravanthi Davuluri (323277)
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Sumeet Nayak (394597)
Sumit Bhutada (394598)
Kshitish Acharya (394599)
Geetanjali Sachdeva (394600)

March 2013

<p>Only significant (p<0.05) annotations are shown. UP-EX genes enriched various biological processe...

Gene ontology (GO) and pathway enrichment analysis of differentially expressed mRNAs.

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Fen Zhang (608307)
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January 2016

<p>(A) Category of cellular components; (B) Category of molecular functions; (C) Category of biologi...

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February 2013

<p>Gene Ontology (GO) analysis of transcriptome associated with oyster of early development. (The pe...

Classifications of predicted target genes according to their gene ontology (GO) annotation terms within biological process (A), molecular function (B) and cellular component (C) ontologies, respectively.

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Tingyi Sun (608624)
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Xiaorui Chen (608625)
Lili Zhao (442802)
Guoqiang Qu (608626)
Qingjie Li (608627)

August 2014

<p>These GO terms showed a statistically significantly enriched representation. Enrichment Score of ...

Gene Ontology (GO) analysis of <i>G</i>. <i>molesta</i> antennal transcripts.

Guangwei Li (822910)
Juan Du (118107)
Yiping Li (139011)
Junxiang Wu (822911)

November 2015

<p>GO terms assigned to biological process, cellular component and molecular functions.</p

Gene ontology analysis for PR target genes.

Anastasia Kougioumtzi (572580)
Panayiotis Tsaparas (572581)
Angeliki Magklara (572582)

June 2014

<p>(A) Highly enriched biological processes were determined by using FatiGO. All GO annotations rela...

Gene ontology (GO) analysis of forty HD related genes identified from MetaCore.

Mu-Hui Fu (796653)
Chia-Ling Li (796654)
Hsiu-Lien Lin (796655)
Shaw-Jeng Tsai (796656)
Yen-Yu Lai (10772)
Yu-Fan Chang (796657)
Pei-Hsun Cheng (47551)
Chuan-Mu Chen (180951)
Shang-Hsun Yang (180943)

September 2015

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The classifications of transcripts according to Gene Ontology (GO) terms.

Martin J. Blythe (144604)
Sunir Malla (60235)
Richard Everall (176629)
Yu-huan Shih (176632)
Virginie Lemay (176635)
Joanna Moreton (176637)
Raymond Wilson (176639)
A. Aziz Aboobaker (175893)

March 2012

<p>The classification counts are shown for each of the first tier terms of the three GO database dom...

The gene ontology (GO) identified by functional analyses.

Heungnam Kim (156424)
Yen Phung (156427)
Mitchell Ho (156431)

June 2012

<p>Gene ontology was performed using the Database for Annotation, Visualization and Integrated Disco...

Gene Ontology (GO) characterization of upregulated genes.

Gautam Vishwakarma (4634668)
Ajay Saini (7821638)
Subhash Chander Bhardwaj (8927279)
Satish Kumar (37582)
Bikram Kishore Das (4634674)

December 2023

Overview of GO terms in (A) HW2004 and (B) C306. BP refers to Biological Process, MF to Molecular Fu...

Gene ontology (GO) enrichment analysis for differentially regulated mRNAs.

Juanjuan Zhu (598334)
Shanshan Liu (315561)
Fuqiang Ye (598335)
Yuan Shen (194742)
Yi Tie (598336)
Jie Zhu (126574)
Yinghua Jin (598337)
Xiaofei Zheng (169655)
Yongge Wu (598338)
Hanjiang Fu (169651)

July 2014

<p>(A) GO analysis of mRNAs according to biological process. (B) GO analysis of mRNAs according to c...

Gene Ontology (GO) annotations.

Mark F. Richardson (109910)
Craig D. H. Sherman (360607)

November 2015

<p>The top 10 represented GO terms for each of the GO categories: Biological Process, Molecular Func...

Gene ontology (GO) enrichment analysis for differentially expressed genes.

Shuyan Ma (690922)
Li Qing (16548)
Xiaobo Yang (123393)
Guiqiang Liang (844543)
Li’e Zhang (844544)
Qin Li (36669)
Feng Xiong (306053)
Suwan Peng (844545)
Yifei Ma (206062)
Xiaowei Huang (111125)
Yunfeng Zou (188227)

January 2016

<p>GO analysis provides a controlled vocabulary to describe differentially expressed transcript attr...

Gene ontology enrichment analysis of the top 200 genes.

Said el Bouhaddani (5849936)
Matthias Höllerhage (667412)
Hae-Won Uh (28932)
Claudia Moebius (17879860)
Marc Bickle (51929)
Günter Höglinger (571659)
Jeanine Houwing-Duistermaat (56474)

January 2024

Out of 1732 genes/proteins, the 200 genes/proteins with the highest weight (estimated using POPLS-DA...

Gene ontology (GO) analysis of differentially expressed proteins.

Xueyuan Jiang (375166)
Tao Zeng (103451)
Shukun Zhang (486921)
Yuanshu Zhang (409748)

November 2013

<p>GO annotations are presented by category: A) biological process B) cellular components C) molecul...

Gene Ontology (GO) analysis to categorize the Receptivity Associated Genes (RAGs) according to A) molecular functions B) biological processes C) cellular components.

Sonali R. Bhagwat (394595)
Darshan S. Chandrashekar (323279)
Ruchi Kakar (394596)
Sravanthi Davuluri (323277)
Akhilesh K. Bajpai (323275)
Sumeet Nayak (394597)
Sumit Bhutada (394598)
Kshitish Acharya (394599)
Geetanjali Sachdeva (394600)

March 2013

<p>Only significant (p<0.05) annotations are shown. UP-EX genes enriched various biological processe...

Gene ontology (GO) and pathway enrichment analysis of differentially expressed mRNAs.

Jian Yang (12136)
Fen Zhang (608307)
Jing Li (10611)
Jian-Ping Chen (286449)
Heng-Mu Zhang (847646)

January 2016

<p>(A) Category of cellular components; (B) Category of molecular functions; (C) Category of biologi...

Gene Ontology (GO) analysis of transcriptome associated with oyster of early development. (The percentage and distribution of top-level GO-terms were portrayed in the three categories: Biological process, Cellular component and Molecular function.).

Ji Qin (310208)
Zixia Huang (154157)
Jun Chen (4238)
Quan Zou (157931)
Weiwei You (310211)
Caihuan Ke (245901)

February 2013

<p>Gene Ontology (GO) analysis of transcriptome associated with oyster of early development. (The pe...

Classifications of predicted target genes according to their gene ontology (GO) annotation terms within biological process (A), molecular function (B) and cellular component (C) ontologies, respectively.

Liang Liu (50022)
Tingyi Sun (608624)
Zilong Liu (548959)
Xiaorui Chen (608625)
Lili Zhao (442802)
Guoqiang Qu (608626)
Qingjie Li (608627)

August 2014

<p>These GO terms showed a statistically significantly enriched representation. Enrichment Score of ...

Gene Ontology (GO) analysis of <i>G</i>. <i>molesta</i> antennal transcripts.

Guangwei Li (822910)
Juan Du (118107)
Yiping Li (139011)
Junxiang Wu (822911)

November 2015

<p>GO terms assigned to biological process, cellular component and molecular functions.</p

Gene ontology analysis for PR target genes.

Anastasia Kougioumtzi (572580)
Panayiotis Tsaparas (572581)
Angeliki Magklara (572582)

June 2014

<p>(A) Highly enriched biological processes were determined by using FatiGO. All GO annotations rela...

Gene ontology (GO) analysis of forty HD related genes identified from MetaCore.

Mu-Hui Fu (796653)
Chia-Ling Li (796654)
Hsiu-Lien Lin (796655)
Shaw-Jeng Tsai (796656)
Yen-Yu Lai (10772)
Yu-Fan Chang (796657)
Pei-Hsun Cheng (47551)
Chuan-Mu Chen (180951)
Shang-Hsun Yang (180943)

September 2015

<p>1094 significant genes were analyzed using the MetaCore built-in HD pathway, and 40 HD-related ge...

The classifications of transcripts according to Gene Ontology (GO) terms.

Martin J. Blythe (144604)
Sunir Malla (60235)
Richard Everall (176629)
Yu-huan Shih (176632)
Virginie Lemay (176635)
Joanna Moreton (176637)
Raymond Wilson (176639)
A. Aziz Aboobaker (175893)

March 2012

<p>The classification counts are shown for each of the first tier terms of the three GO database dom...

The gene ontology (GO) identified by functional analyses.

Heungnam Kim (156424)
Yen Phung (156427)
Mitchell Ho (156431)

June 2012

<p>Gene ontology was performed using the Database for Annotation, Visualization and Integrated Disco...

Gene Ontology (GO) characterization of upregulated genes.

Gautam Vishwakarma (4634668)
Ajay Saini (7821638)
Subhash Chander Bhardwaj (8927279)
Satish Kumar (37582)
Bikram Kishore Das (4634674)

December 2023

Overview of GO terms in (A) HW2004 and (B) C306. BP refers to Biological Process, MF to Molecular Fu...