Binding energy for SIM/SUMO2 complex. Additional potentials. Simulation methods: Equilibrum simulation of free RRMs; Equilibrum simulation of full length RBD; Structural prediction to the SUMO2/RBD complex; Free energy profiles for RNA dissociation; Free energy profiles for the closure motion of RRMs. Efficiency of the shift of RNA-binding equilibration. (PDF)</p
<p>RNA-binding protein with multiple splicing (RBPMS) is critical for axon guidance, smooth muscle p...
Abstract: The authors describe the development and testing of a semiempirical free energy force fiel...
10*100ns simulations of Ago2-RNA complex in the AMOEBA force field. The simulations were conducted u...
A. The 1D Free energy profile for RNA-free RBD and SUMO2/RBD complex using PC0 as the order paramete...
A. The free energy landscape for RBD/RNA using Qf and PC0 as the two order parameters. B. The free e...
For the RRMs and the RBD, the RNA dissociation is a two-step process: RNA dissociation from RRM2 is ...
The ability to accurately predict binding free energies from computer simulations is an invaluable r...
The accurate prediction of protein–protein complex geometries is of major importance to ultimately m...
Atomistic models provide a detailed representation of molecular systems, but are sometimes inadequat...
[eng] Classical force fields are the core of classical simulations, particularly of molecular dynam...
<p>RMSD value in the last column refers to the average value of ligand during the whole MD simulatio...
We report over 30 μs of unrestrained molecular dynamics simulations of six protein–RNA complexes in ...
One common objective of molecular simulations in chemistry and biology is to calcu-late the free ene...
Predicted binding free energies, by Rosetta and the MM-GBSA technique, to Omicron RBD of ACE2, SPB25...
To accelerate conformation sampling of slow dynamics from receptor or ligand, we introduced flatteni...
<p>RNA-binding protein with multiple splicing (RBPMS) is critical for axon guidance, smooth muscle p...
Abstract: The authors describe the development and testing of a semiempirical free energy force fiel...
10*100ns simulations of Ago2-RNA complex in the AMOEBA force field. The simulations were conducted u...
A. The 1D Free energy profile for RNA-free RBD and SUMO2/RBD complex using PC0 as the order paramete...
A. The free energy landscape for RBD/RNA using Qf and PC0 as the two order parameters. B. The free e...
For the RRMs and the RBD, the RNA dissociation is a two-step process: RNA dissociation from RRM2 is ...
The ability to accurately predict binding free energies from computer simulations is an invaluable r...
The accurate prediction of protein–protein complex geometries is of major importance to ultimately m...
Atomistic models provide a detailed representation of molecular systems, but are sometimes inadequat...
[eng] Classical force fields are the core of classical simulations, particularly of molecular dynam...
<p>RMSD value in the last column refers to the average value of ligand during the whole MD simulatio...
We report over 30 μs of unrestrained molecular dynamics simulations of six protein–RNA complexes in ...
One common objective of molecular simulations in chemistry and biology is to calcu-late the free ene...
Predicted binding free energies, by Rosetta and the MM-GBSA technique, to Omicron RBD of ACE2, SPB25...
To accelerate conformation sampling of slow dynamics from receptor or ligand, we introduced flatteni...
<p>RNA-binding protein with multiple splicing (RBPMS) is critical for axon guidance, smooth muscle p...
Abstract: The authors describe the development and testing of a semiempirical free energy force fiel...
10*100ns simulations of Ago2-RNA complex in the AMOEBA force field. The simulations were conducted u...