Additional file 3 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Proteomic Investigation Reveals Dominant Alterations of Neutrophil Degranulation and mRNA Translation Pathways in COVID-19 Patients. Bankar et. al.

Srivastava, S

This dataset comprises of supplementary files for the comprehensive proteomics-based investigation o...

Additional file 1 of Quantitative proteomics identified circulating biomarkers in lung adenocarcinoma diagnosis

Hongyu Chen (105612)
Xiaoqin Lai (14148899)
Yihan Zhu (1333899)
Hong Huang (119275)
Lingyan Zeng (1414378)
Li Zhang (8200)

November 2022

Additional file 1: Table S1. Differentially expressed proteins identified in plasma samples

Supplementary information for "Plasma Proteomics identify Biomarkers and Pathogenesis of COVID-19"

Zhou, X (via Mendeley Data)

October 2020

Provided here are the supplementary information for the below manuscript published in Immunity "Prov...

Additional file 2 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 2: Tables S2: MaxQuant software analysis of peptides detected by mass spectrometry f...

Additional file 4 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 4: Table S4: Proteins with statistically different levels in COVID-19 patients

Additional file 5 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 5: Table S5: Analysis of biological processes associated to the proteins altered in ...

Additional file 6 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 6: Table S6: Cluster analysis of proteins modulated in the plasma of COVID-19 patien...

Additional file 1 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 1: Tables S1: Demographics, clinical baseline characteristics, therapy and cause of ...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

January 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

January 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Additional file 1 of Plasma proteomics-based biomarkers for predicting response to mesenchymal stem cell therapy in severe COVID-19

Tian-Tian Li (451683)
Wei-Qi Yao (17612434)
Hai-Bo Dong (17612437)
Ze-Rui Wang (17612440)
Zi-Ying Zhang (17612443)
Meng-Qi Yuan (17612446)
Lei Shi (8144)
Fu-Sheng Wang (17612449)

December 2023

Additional file 1. Fig. S1: Distribution and quality control of the total proteins detected

Proteomic Investigation Reveals Dominant Alterations of Neutrophil Degranulation and mRNA Translation Pathways in COVID-19 Patients. Bankar et. al.

Srivastava, S

This dataset comprises of supplementary files for the comprehensive proteomics-based investigation o...

Additional file 1 of Quantitative proteomics identified circulating biomarkers in lung adenocarcinoma diagnosis

Hongyu Chen (105612)
Xiaoqin Lai (14148899)
Yihan Zhu (1333899)
Hong Huang (119275)
Lingyan Zeng (1414378)
Li Zhang (8200)

November 2022

Additional file 1: Table S1. Differentially expressed proteins identified in plasma samples

Supplementary information for "Plasma Proteomics identify Biomarkers and Pathogenesis of COVID-19"

Zhou, X (via Mendeley Data)

October 2020

Provided here are the supplementary information for the below manuscript published in Immunity "Prov...

Additional file 2 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 2: Tables S2: MaxQuant software analysis of peptides detected by mass spectrometry f...

Additional file 4 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 4: Table S4: Proteins with statistically different levels in COVID-19 patients

Additional file 5 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 5: Table S5: Analysis of biological processes associated to the proteins altered in ...

Additional file 6 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 6: Table S6: Cluster analysis of proteins modulated in the plasma of COVID-19 patien...

Additional file 1 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Fabiola Ciccosanti (2118151)
Manuela Antonioli (6561800)
Alessandra Sacchi (322123)
Stefania Notari (10699017)
Anna Farina (119664)
Alessia Beccacece (14081113)
Marisa Fusto (14081116)
Alessandra Vergori (4540474)
Gianpiero D’Offizi (322128)
Fabrizio Taglietti (10684545)
Andrea Antinori (103654)
Emanuele Nicastri (310235)
Luisa Marchioni (9775049)
Fabrizio Palmieri (2830802)
Giuseppe Ippolito (7056)
Mauro Piacentini (377487)
Chiara Agrati (322137)
Gian Maria Fimia (431159)

November 2022

Additional file 1: Tables S1: Demographics, clinical baseline characteristics, therapy and cause of ...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

January 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

November 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Ciccosanti, Fabiola
Antonioli, Manuela
Sacchi, Alessandra
Notari, Stefania
Farina, Anna
Beccacece, Alessia
Fusto, Marisa
Vergori, Alessandra
D'Offizi, Gianpiero
Taglietti, Fabrizio
Antinori, Andrea
Nicastri, Emanuele
Marchioni, Luisa
Palmieri, Fabrizio
Ippolito, Giuseppe
Piacentini, Mauro
Agrati, Chiara
Fimia, Gian Maria

January 2022

Most patients infected with SARS-CoV-2 display mild symptoms with good prognosis, while 20% of patie...

Additional file 1 of Plasma proteomics-based biomarkers for predicting response to mesenchymal stem cell therapy in severe COVID-19

Tian-Tian Li (451683)
Wei-Qi Yao (17612434)
Hai-Bo Dong (17612437)
Ze-Rui Wang (17612440)
Zi-Ying Zhang (17612443)
Meng-Qi Yuan (17612446)
Lei Shi (8144)
Fu-Sheng Wang (17612449)

December 2023

Additional file 1. Fig. S1: Distribution and quality control of the total proteins detected

Proteomic Investigation Reveals Dominant Alterations of Neutrophil Degranulation and mRNA Translation Pathways in COVID-19 Patients. Bankar et. al.

Srivastava, S

This dataset comprises of supplementary files for the comprehensive proteomics-based investigation o...

Additional file 1 of Quantitative proteomics identified circulating biomarkers in lung adenocarcinoma diagnosis

Hongyu Chen (105612)
Xiaoqin Lai (14148899)
Yihan Zhu (1333899)
Hong Huang (119275)
Lingyan Zeng (1414378)
Li Zhang (8200)

November 2022

Additional file 1: Table S1. Differentially expressed proteins identified in plasma samples

Supplementary information for "Plasma Proteomics identify Biomarkers and Pathogenesis of COVID-19"

Zhou, X (via Mendeley Data)

October 2020

Provided here are the supplementary information for the below manuscript published in Immunity "Prov...

Additional file 3 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Abstract

Extracted data

Additional file 3 of Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation

Abstract

Extracted data

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