JSBML

JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.Related Publication:</p> JSBML 1.0: providing a smorgasbord of options to encode systems biology models</p> Nicolas Rodriguez Babraham Institute, Babraham Research Campus, Cambridge, UK</p> Alex Thomas University of California, San Diego, La Jolla, CA, USA</p> Leandro Watanabe The University of Utah, Salt Lake City, UT, USA</p> Ibrahim Y. Vazirabad Marquette University, Milwaukee, WI, USA</p> Victor Kofia Princess Margaret Cancer Centre</p> Harold Gómez Boston University, Boston, MA, USA</p> Florian Mittag Center for Bioinformatics Tübingen</p> Jakob Matthes Center for Bioinformatics Tübingen</p> Jan Rudolph Center for Bioinformatics Tübingen</p> Finja Wrzodek Center for Bioinformatics Tübingen</p> Eugen Netz Center for Bioinformatics Tübingen</p> Alexander Diamantikos Center for Bioinformatics Tübingen</p> Johannes Eichner Center for Bioinformatics Tübingen</p> Roland Keller Center for Bioinformatics Tübingen</p> Clemens Wrzodek Center for Bioinformatics Tübingen</p> Sebastian Fröhlich Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany</p> Nathan E. Lewis University of California, San Diego, La Jolla, CA, USA</p> Chris J. Myers The University of Utah, Salt Lake City, UT, USA</p> Nicolas Le Novère Babraham Institute, Babraham Research Campus, Cambridge, UK</p> Bernhard Ø. Pallson University of California, San Diego, La Jolla, CA, USA</p> Michael Hucka Caltech</p> Andreas Dräger Center for Bioinformatics Tübingen</p> Bioinformatics</p> 2015-10-15</p> https://doi.org/10.1093/bioinformatics/btv341</p>en