Stochastic simulation platform for visualization and estimation of transcriptional kinetics

This package includes the MATLAB app GUI, source code, and search algorithm for the preprint "Stochastic simulation platform for visualization and estimation of transcriptional kinetics." The GUI simulates and visualizes RNA transcription; the source code allows implementation of more complex reaction schema; the search algorithm performs parameter estimation. The code is based on the Gillespie algorithm and implemented in MATLAB