Additional file 6 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Additional file 6: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S4. The expression levels of the JA-related genes in different Taxus species. (XLSX 17 kb

Additional file 7: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S5. Identifications of transcription factors of the three Taxus species. (XLSX 205 kb

Table_6_Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus.xlsx

Ji-Nam Kang (11589724)
Mok Hur (16753262)
Chang-Kug Kim (727860)
So-Hee Yang (17915306)
Si-Myung Lee (8890988)

February 2024

Astragalus membranaceus is a medicinal plant mainly used in East Asia and contains abundant secondar...

Additional file 7 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 7: Supplementary Table S5. Differentially expressed genes between HS2 and YS1

Additional file 10 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 10: Supplementary Table S8. Differential expression of transcription factors genes

Additional file 8 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 8: Supplementary Table S6. KEGG pathways of DEGs between HS2 and YS1

Additional file 3 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 3: Supplementary Table S1. Seven databases showed the annotation results of the full...

Additional file 2 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 2: Supplementary Figure S2. Transcription factor family classification. The X-axis r...

Additional file 1 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 1: Supplementary Figure S1. BUSCO assembly evaluation results. C (complete): matches...

Additional file 8: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S6. The numbers of differential expressed TFs in the three comparisons. (XLSX 9 kb

Additional file 14: of Comparative transcriptome analysis of roots, stems and leaves of Isodon amethystoides reveals candidate genes involved in Wangzaozins biosynthesis

Fenglan Zhao (5948246)
Mengchu Sun (5948252)
Wanjun Zhang (496858)
Chunli Jiang (1713937)
Jingtong Teng (5948273)
Wei Sheng (2031655)
Mingzhi Li (5352410)
Aimin Zhang (239250)
Yongbo Duan (5948279)
Jianping Xue (5948282)

November 2018

Table S10. Summary of transcripts in Isodon amethystoides encoding enzymes involved in the tetracycl...

Additional file 3: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Sequences of candidate unigenes were identified to be involved in terpenoid biosynthesis. (TXT 108Â ...

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 6: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

Analysis of the gene expression correlation between the two indicated pairs of samples (T1 versus WT...

Additional file 4: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Figure S2. Phylogenetic analysis of the proteins associated with the MEP pathway. (DOCX 412 kb

Additional file 6: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S4. The expression levels of the JA-related genes in different Taxus species. (XLSX 17 kb

Additional file 7: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S5. Identifications of transcription factors of the three Taxus species. (XLSX 205 kb

Table_6_Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus.xlsx

Ji-Nam Kang (11589724)
Mok Hur (16753262)
Chang-Kug Kim (727860)
So-Hee Yang (17915306)
Si-Myung Lee (8890988)

February 2024

Astragalus membranaceus is a medicinal plant mainly used in East Asia and contains abundant secondar...

Additional file 7 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 7: Supplementary Table S5. Differentially expressed genes between HS2 and YS1

Additional file 10 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 10: Supplementary Table S8. Differential expression of transcription factors genes

Additional file 8 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 8: Supplementary Table S6. KEGG pathways of DEGs between HS2 and YS1

Additional file 3 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 3: Supplementary Table S1. Seven databases showed the annotation results of the full...

Additional file 2 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 2: Supplementary Figure S2. Transcription factor family classification. The X-axis r...

Additional file 1 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Lei Hou (274359)
Guanghui Li (432992)
Qingliang Chen (8504544)
JinJin Zhao (13928565)
Jiaowen Pan (786511)
Ruxia Lin (13928568)
Xiujin Zhu (13928571)
Pengfei Wang (123133)
Xingjun Wang (444369)

October 2022

Additional file 1: Supplementary Figure S1. BUSCO assembly evaluation results. C (complete): matches...

Additional file 8: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S6. The numbers of differential expressed TFs in the three comparisons. (XLSX 9 kb

Additional file 14: of Comparative transcriptome analysis of roots, stems and leaves of Isodon amethystoides reveals candidate genes involved in Wangzaozins biosynthesis

Fenglan Zhao (5948246)
Mengchu Sun (5948252)
Wanjun Zhang (496858)
Chunli Jiang (1713937)
Jingtong Teng (5948273)
Wei Sheng (2031655)
Mingzhi Li (5352410)
Aimin Zhang (239250)
Yongbo Duan (5948279)
Jianping Xue (5948282)

November 2018

Table S10. Summary of transcripts in Isodon amethystoides encoding enzymes involved in the tetracycl...

Additional file 3: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Sequences of candidate unigenes were identified to be involved in terpenoid biosynthesis. (TXT 108Â ...

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 6: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

Analysis of the gene expression correlation between the two indicated pairs of samples (T1 versus WT...

Additional file 4: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Figure S2. Phylogenetic analysis of the proteins associated with the MEP pathway. (DOCX 412 kb

Additional file 6: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S4. The expression levels of the JA-related genes in different Taxus species. (XLSX 17 kb

Additional file 7: of Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species

Ting Zhou (38572)
Xiujun Luo (5398052)
Chunna Yu (722020)
Chengchao Zhang (6248711)
Lei Zhang (38117)
Yao-bin Song (6248714)
Ming Dong (102668)
Chenjia Shen (630236)

January 2019

Table S5. Identifications of transcription factors of the three Taxus species. (XLSX 205 kb

Table_6_Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus.xlsx

Ji-Nam Kang (11589724)
Mok Hur (16753262)
Chang-Kug Kim (727860)
So-Hee Yang (17915306)
Si-Myung Lee (8890988)

February 2024

Astragalus membranaceus is a medicinal plant mainly used in East Asia and contains abundant secondar...

Additional file 6 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Abstract

Extracted data

Additional file 6 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

Abstract

Extracted data

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