Fish ecology and ecophysiology in an anthropogenically-altered temporarily open/closed estuary in the warm-temperate region of the Eastern Cape Province, South Africa

Estuaries are globally recognized for their contribution to the coastal marine environment by acting as nursery grounds for numerous marine estuarine-dependent fish species. These linking ecosystems between marine and riverine environments, are ideal for these species due to the habitat diversity, nutrient and food availability, shallower and calmer environments they provide relative to the ocean. Abrupt hydrodynamic and physico-chemical changes which frequently occur in estuaries impose physiological stress and requires superior adaptability in the fish that reside within them. This is exacerbated by anthropogenic modifications to estuaries which affects their natural ecological function. The Seekoei Estuary is one of 192 temporarily open/closed estuaries (TOCEs) in South Africa and these estuaries are characterised by their periodical connection to the sea due to the formation of a mouth berm. These estuaries are the dominant type in South Africa. A lot of research has been done in these kinds of estuaries, however, it is still limited due to their vast numbers. These estuaries are popular for human settlement and this has led to mismanagement due to the lack of ecological information. Furthermore, because of their inability to continuously flush out water, temporarily open closed estuaries are more vulnerable to pollution and anthropogenic modifications. The aim of this study was to assess the small fish community in relation to their environment in the hypersaline anthropogenically-altered Seekoei Estuary, by analysing the spatio-temporal trends of physico-chemical properties, nutrient loads, phytoplankton biomass and fish community structure. In addition, histological adaptation in gills of fish that survive hypersaline water was investigated. The study found that physico-chemical properties were influenced by anthropogenic alterations, in particular adverse water abstraction, instream water obstructions and artificial breaching. Nutrient concentration was found to be influenced by the intense agricultural practices in the upper reaches. It was evident that nutrient concentration (dissolved inorganic phosphorus) coupled with high salinity and optimum temperature (15 oC - 20 oC) affected the phytoplankton biomass. This estuary’s inability to naturally breach makes it vulnerable to phytoplankton blooms. The accumulation of cohesive silt caused by low river inflow, due to water abstraction in the upper reaches, was attributed to this estuary’s prolonged mouth closure. This was exacerbated by the presence of the causeway, which acts as a barrier between the middle and lower estuary. The abundance of marine fish species in the estuary, despite its long closure, indicates that the larvae and juveniles of these species make use of overwash events and brief artificial breaching events to recruit into the estuary. The high species richness in iii sites below the causeway is indicative of the barrier effect, which prevents the migration of some species to the upper reaches. This was evident during a massive fish kill, recorded during this study, which was more severe in sites below the causeway than above it. Chloride cell hyperplasia, mucus secretion and thickening of the epithelial layer in gills of indicator fish species from this estuary was the histological adaptation, which enables these fishes to be tolerant to high salinity.Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 202