Masonry churches are effectively studied by means of kinematic analyses on macro-elements. This paper presents a procedure to recognize and evaluate the contribution to the dynamic response of such macro-elements by means of nonlinear transient analyses. In particular, it consists in evaluating damages occurred by applying accelerograms of the Emilia Romagna earthquake (Italy, 2012) to a small church characterized by a complex damage pattern. First, a modal analysis furnished qualitative information about vulnerable macro-elements of the chapel, stressing the high vulnerability of the central vault, actually collapsed, and that of the façade, subjected by an incipient overturning and in plane mechanism. Afterwards, a more sophisticated appr...