Additional file 2 of H3K18 lactylation marks tissue-specific active enhancers

Underlying image data for the western blot experiments in Figs 2, 4, 5, S1, S5 and S8.

Sébastien Tauzin (216750)
Benjamin Chaigne-Delalande (216753)
Eric Selva (216754)
Nadine Khadra (216756)
Sophie Daburon (216759)
Cécile Contin-Bordes (216761)
Patrick Blanco (11512)
Jacques Le Seyec (216763)
Thomas Ducret (216765)
Laurent Counillon (216766)
Jean-François Moreau (11510)
Paul Hofman (103032)
Pierre Vacher (216767)
Patrick Legembre (216769)

February 2023

Underlying image data for the western blot experiments in Figs 2, 4, 5, S1, S5 and S8.</p

Western blot images related to "A macrophage-hepatocyte glucocorticoid receptor axis coordinates fasting ketogenesis"

Anne Loft

December 2021

Raw and processed western blot images PDF files contain western blot images with marker band indica...

Additional file 1: of A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops

Jayoung Ryu (6529505)
Hyunwoong Kim (4328974)
Dongchan Yang (6529508)
Andrew Lee (74302)
Inkyung Jung (94394)

March 2019

Figure S1. Ubiquitous activity of super-enhancers defined in one cell/tissue type. 196 super-enhance...

Additional file 1 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 1: Supplemental figures. Fig S1, Fig S2, Fig S3, Fig S4, Fig S5, Fig S6, Fig S7, Fig...

Additional file 4 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 4: Table S2: Genes whose promoters lie in state 8 from the mouse H3K18la ChromHMM. D...

Additional file 3 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 3: Table S1: Quality Control metrics. For each sample included in this study, the fo...

Additional file 6 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 6: Table S4: Genes expression changes in MB treated with 10 mM lactate. Data used in...

Additional file 5 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 5: Table S3: GO categories of genes whose promoters lie in state 8 from the mouse H3...

H3K18 lactylation marks tissue‑specific active enhancers

Galle, Eva
Ruiz Ojeda, Francisco Javier
Ruiz Ruiz, Jonatan

October 2022

Background: Histone lactylation has been recently described as a novel histone posttranslational mo...

H3K18 lactylation marks tissue-specific active enhancers.

Galle, E.
Wong, C.W.
Ghosh, A.
Desgeorges, T.
Melrose, K.
Hinte, L.C.
Castellano-Castillo, D.
Engl, M.
de Sousa, J.A.
Ruiz Ojeda, F.J.
de Bock, K.
Ruiz, J.R.
von Meyenn, F.

January 2022

BACKGROUND: Histone lactylation has been recently described as a novel histone post-translational mo...

Additional file 2 of VHHs as tools for therapeutic protein delivery to the central nervous system

Yessica Wouters (13903039)
Tom Jaspers (6921167)
Laura Rué (6950345)
Lutgarde Serneels (783870)
Bart De Strooper (189361)
Maarten Dewilde (13896684)

October 2022

Additional file 2: Figure S2. uncropped Western blot images from figure 3A. Blot was cut horizontall...

Original western blot images.

Alan T. Tang (14573750)
David W. Buchholz (14573753)
Katherine M. Szigety (14573756)
Brian Imbiakha (14573759)
Siqi Gao (9115508)
Maxwell Frankfurter (14573762)
Min Wang (21070)
Jisheng Yang (14573765)
Peter Hewins (435225)
Patricia Mericko-Ishizuka (14573768)
N Adrian Leu (14573771)
Stephanie Sterling (4452889)
Isaac A. Monreal (14573774)
Julie Sahler (666499)
Avery August (49283)
Xuming Zhu (306147)
Kellie A. Jurado (11021731)
Mingang Xu (746507)
Edward E. Morrisey (12224041)
Sarah E. Millar (9122611)
Hector C. Aguilar (245661)
Mark L. Kahn (8539215)

February 2023

In this file are unedited western blot images corresponding to those presented throughout the manusc...

H3K18 lactylation marks tissue-specific active enhancers

Galle, Eva
Wong, Chee-Wai
Ghosh, Adhideb
Desgeorges, Thibaut
Melrose, Kate
Hinte, Laura C
Castellano-Castillo, Daniel
Engl, Magdalena
de Sousa, Joao Agostinho
Ruiz-Ojeda, Francisco Javier
De Bock, Katrien
Ruiz, Jonatan R
von Meyenn, Ferdinand

October 2022

Background: Histone lactylation has been recently described as a novel histone post-translational mo...

Additional file 3: of Investigating the mechanism by which SMAD3 induces PAX6 transcription to promote the development of non-small cell lung cancer

Zhe Qian (509424)
Qiankun Zhang (3796810)
Ying Hu (14950)
Tongmei Zhang (6164219)
Jie Li (15030)
Zan Liu (580421)
Hua Zheng (1787305)
Yuan Gao (159945)
Wenyun Jia (509423)
Aimin Hu (414018)
Baolan Li (2174310)
Jiqing Hao (6164222)

December 2018

Figure S1. Uncropped blot of the result of western blot. (A) the uncropped blot of SMAD3 protein in ...

Additional file 9 of HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures

Hani Girgis (5712143)
Alfredo Velasco (5712146)
Zachary Reyes (5712149)

September 2018

Figure S1. HebbPlots of enhancers specific to H1 cell line. These plots were generated from enhancer...

Underlying image data for the western blot experiments in Figs 2, 4, 5, S1, S5 and S8.

Sébastien Tauzin (216750)
Benjamin Chaigne-Delalande (216753)
Eric Selva (216754)
Nadine Khadra (216756)
Sophie Daburon (216759)
Cécile Contin-Bordes (216761)
Patrick Blanco (11512)
Jacques Le Seyec (216763)
Thomas Ducret (216765)
Laurent Counillon (216766)
Jean-François Moreau (11510)
Paul Hofman (103032)
Pierre Vacher (216767)
Patrick Legembre (216769)

February 2023

Underlying image data for the western blot experiments in Figs 2, 4, 5, S1, S5 and S8.</p

Western blot images related to "A macrophage-hepatocyte glucocorticoid receptor axis coordinates fasting ketogenesis"

Anne Loft

December 2021

Raw and processed western blot images PDF files contain western blot images with marker band indica...

Additional file 1: of A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops

Jayoung Ryu (6529505)
Hyunwoong Kim (4328974)
Dongchan Yang (6529508)
Andrew Lee (74302)
Inkyung Jung (94394)

March 2019

Figure S1. Ubiquitous activity of super-enhancers defined in one cell/tissue type. 196 super-enhance...

Additional file 1 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 1: Supplemental figures. Fig S1, Fig S2, Fig S3, Fig S4, Fig S5, Fig S6, Fig S7, Fig...

Additional file 4 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 4: Table S2: Genes whose promoters lie in state 8 from the mouse H3K18la ChromHMM. D...

Additional file 3 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 3: Table S1: Quality Control metrics. For each sample included in this study, the fo...

Additional file 6 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 6: Table S4: Genes expression changes in MB treated with 10 mM lactate. Data used in...

Additional file 5 of H3K18 lactylation marks tissue-specific active enhancers

Eva Galle (8454645)
Chee-Wai Wong (7252199)
Adhideb Ghosh (9899189)
Thibaut Desgeorges (6187841)
Kate Melrose (13903619)
Laura C. Hinte (13903622)
Daniel Castellano-Castillo (4853770)
Magdalena Engl (13903625)
Joao Agostinho de Sousa (13903628)
Francisco Javier Ruiz-Ojeda (3214866)
Katrien De Bock (382927)
Jonatan R. Ruiz (7158836)
Ferdinand von Meyenn (13903631)

October 2022

Additional file 5: Table S3: GO categories of genes whose promoters lie in state 8 from the mouse H3...

H3K18 lactylation marks tissue‑specific active enhancers

Galle, Eva
Ruiz Ojeda, Francisco Javier
Ruiz Ruiz, Jonatan

October 2022

Background: Histone lactylation has been recently described as a novel histone posttranslational mo...

H3K18 lactylation marks tissue-specific active enhancers.

Galle, E.
Wong, C.W.
Ghosh, A.
Desgeorges, T.
Melrose, K.
Hinte, L.C.
Castellano-Castillo, D.
Engl, M.
de Sousa, J.A.
Ruiz Ojeda, F.J.
de Bock, K.
Ruiz, J.R.
von Meyenn, F.

January 2022

BACKGROUND: Histone lactylation has been recently described as a novel histone post-translational mo...

Additional file 2 of VHHs as tools for therapeutic protein delivery to the central nervous system

Yessica Wouters (13903039)
Tom Jaspers (6921167)
Laura Rué (6950345)
Lutgarde Serneels (783870)
Bart De Strooper (189361)
Maarten Dewilde (13896684)

October 2022

Additional file 2: Figure S2. uncropped Western blot images from figure 3A. Blot was cut horizontall...

Original western blot images.

Alan T. Tang (14573750)
David W. Buchholz (14573753)
Katherine M. Szigety (14573756)
Brian Imbiakha (14573759)
Siqi Gao (9115508)
Maxwell Frankfurter (14573762)
Min Wang (21070)
Jisheng Yang (14573765)
Peter Hewins (435225)
Patricia Mericko-Ishizuka (14573768)
N Adrian Leu (14573771)
Stephanie Sterling (4452889)
Isaac A. Monreal (14573774)
Julie Sahler (666499)
Avery August (49283)
Xuming Zhu (306147)
Kellie A. Jurado (11021731)
Mingang Xu (746507)
Edward E. Morrisey (12224041)
Sarah E. Millar (9122611)
Hector C. Aguilar (245661)
Mark L. Kahn (8539215)

February 2023

In this file are unedited western blot images corresponding to those presented throughout the manusc...

H3K18 lactylation marks tissue-specific active enhancers

Galle, Eva
Wong, Chee-Wai
Ghosh, Adhideb
Desgeorges, Thibaut
Melrose, Kate
Hinte, Laura C
Castellano-Castillo, Daniel
Engl, Magdalena
de Sousa, Joao Agostinho
Ruiz-Ojeda, Francisco Javier
De Bock, Katrien
Ruiz, Jonatan R
von Meyenn, Ferdinand

October 2022

Background: Histone lactylation has been recently described as a novel histone post-translational mo...

Additional file 3: of Investigating the mechanism by which SMAD3 induces PAX6 transcription to promote the development of non-small cell lung cancer

Zhe Qian (509424)
Qiankun Zhang (3796810)
Ying Hu (14950)
Tongmei Zhang (6164219)
Jie Li (15030)
Zan Liu (580421)
Hua Zheng (1787305)
Yuan Gao (159945)
Wenyun Jia (509423)
Aimin Hu (414018)
Baolan Li (2174310)
Jiqing Hao (6164222)

December 2018

Figure S1. Uncropped blot of the result of western blot. (A) the uncropped blot of SMAD3 protein in ...

Additional file 9 of HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures

Hani Girgis (5712143)
Alfredo Velasco (5712146)
Zachary Reyes (5712149)

September 2018

Figure S1. HebbPlots of enhancers specific to H1 cell line. These plots were generated from enhancer...

Underlying image data for the western blot experiments in Figs 2, 4, 5, S1, S5 and S8.

Sébastien Tauzin (216750)
Benjamin Chaigne-Delalande (216753)
Eric Selva (216754)
Nadine Khadra (216756)
Sophie Daburon (216759)
Cécile Contin-Bordes (216761)
Patrick Blanco (11512)
Jacques Le Seyec (216763)
Thomas Ducret (216765)
Laurent Counillon (216766)
Jean-François Moreau (11510)
Paul Hofman (103032)
Pierre Vacher (216767)
Patrick Legembre (216769)

February 2023

Underlying image data for the western blot experiments in Figs 2, 4, 5, S1, S5 and S8.</p

Western blot images related to "A macrophage-hepatocyte glucocorticoid receptor axis coordinates fasting ketogenesis"

Anne Loft

December 2021

Raw and processed western blot images PDF files contain western blot images with marker band indica...

Additional file 1: of A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops

Jayoung Ryu (6529505)
Hyunwoong Kim (4328974)
Dongchan Yang (6529508)
Andrew Lee (74302)
Inkyung Jung (94394)

March 2019

Figure S1. Ubiquitous activity of super-enhancers defined in one cell/tissue type. 196 super-enhance...

Additional file 2 of H3K18 lactylation marks tissue-specific active enhancers

Abstract

Extracted data

Additional file 2 of H3K18 lactylation marks tissue-specific active enhancers

Abstract

Extracted data

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