Phylogenetic trees are essential to evolutionary biology, and numerous methods exist that attempt to extract phylogenetic information applicable to a wide range of disciplines, such as epidemiology and metagenomics. Currently, the three main Python packages for trees are Bio.Phylo, DendroPy, and the ETE Toolkit, but as dataset sizes grow, parsing and manipulating ultra-large trees becomes impractical for these tools. To address this issue, we present TreeSwift, a user-friendly and massively scalable Python package for traversing and manipulating trees that is ideal for algorithms performed on ultra-large trees
BACKGROUND: Phylogenetic trees are hierarchical structures used for representing the inter-relations...
International audienceBACKGROUND: To effectively apply evolutionary concepts in genome-scale studies...
Phylogenetic trees are graph-like structures whose topology describes the inferred pattern of relati...
Phylogenetic trees are essential to evolutionary biology, and numerous methods exist that attempt to...
Building large supertrees involves the collection, storage, and processing of thousands of individua...
[Background] Ongoing innovation in phylogenetics and evolutionary biology has been accompanied by a ...
Building large supertrees involves the collection, storage, and processing of thousands of individua...
Abstract Background Many bioinformatics analyses, ranging from gene clustering to phylogenetics, pro...
Abstract Background Phylogenies are a key part of research in many areas of biology. Tools that auto...
Paper available from http://www.biomedcentral.com/1471-2148/9/108International audienceBackground: M...
Abstract Background Phylogenetic species trees are widely used in inferring evolutionary relationshi...
Phylogenetic trees illustrate evolutionary relationships between taxa or genes. Tree figures are cru...
Building large supertrees involves the collection, storage, and processing of thousands of individua...
Abstract Background Research in evolution requires software for visualizing and editing phylogenetic...
Phylogenies with extensive taxon sampling have become indispensable for many types of ecological and...
BACKGROUND: Phylogenetic trees are hierarchical structures used for representing the inter-relations...
International audienceBACKGROUND: To effectively apply evolutionary concepts in genome-scale studies...
Phylogenetic trees are graph-like structures whose topology describes the inferred pattern of relati...
Phylogenetic trees are essential to evolutionary biology, and numerous methods exist that attempt to...
Building large supertrees involves the collection, storage, and processing of thousands of individua...
[Background] Ongoing innovation in phylogenetics and evolutionary biology has been accompanied by a ...
Building large supertrees involves the collection, storage, and processing of thousands of individua...
Abstract Background Many bioinformatics analyses, ranging from gene clustering to phylogenetics, pro...
Abstract Background Phylogenies are a key part of research in many areas of biology. Tools that auto...
Paper available from http://www.biomedcentral.com/1471-2148/9/108International audienceBackground: M...
Abstract Background Phylogenetic species trees are widely used in inferring evolutionary relationshi...
Phylogenetic trees illustrate evolutionary relationships between taxa or genes. Tree figures are cru...
Building large supertrees involves the collection, storage, and processing of thousands of individua...
Abstract Background Research in evolution requires software for visualizing and editing phylogenetic...
Phylogenies with extensive taxon sampling have become indispensable for many types of ecological and...
BACKGROUND: Phylogenetic trees are hierarchical structures used for representing the inter-relations...
International audienceBACKGROUND: To effectively apply evolutionary concepts in genome-scale studies...
Phylogenetic trees are graph-like structures whose topology describes the inferred pattern of relati...