Additional file 3 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

CCSSL_PhD_Thesis_Chapter_4_Supplementary_Tables

Catarina

June 2023

Supplementary Tables for Chapter 4 "Diversity and distribution of biosynthetic gene clusters related...

Diversity of Natural Product Biosynthetic Genes in the Microbiome of the Deep Sea Sponges Inflatella pellicula, Poecillastra compressa, and Stelletta normani

Borchert, E.
Jackson, S.
O'Gara, Fergal
Dobson, A.

January 2016

Three different deep sea sponge species, Inflatella pellicula, Poecillastra compressa, and Stelletta...

Additional file 10 of Evolution of mechanisms controlling epithelial morphogenesis across animals: new insights from dissociation-reaggregation experiments in the sponge Oscarella lobularis

Amélie Vernale (11310258)
Maria Mandela Prünster (11310261)
Fabio Marchianò (11310264)
Henry Debost (11310267)
Nicolas Brouilly (11310270)
Caroline Rocher (235350)
Dominique Massey-Harroche (11310273)
Emmanuelle Renard (235348)
André Le Bivic (493807)
Bianca H. Habermann (11310276)
Carole Borchiellini (11310279)

August 2021

Additional file 10: Table S7. Phylostratigraphy analysis. (A) Transcriptomes and Proteomes used in P...

Additional file 2 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Olivia H. Hewitt (13886900)
Sandie M. Degnan (7905290)

September 2022

Additional file 2. Table displaying total number of sequences identified within the genomes of each ...

Additional file 1 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Olivia H. Hewitt (13886900)
Sandie M. Degnan (7905290)

September 2022

Additional file 1: Table S1. Details and availability of the 19 metazoan genomes used in this study....

Additional file 4 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Olivia H. Hewitt (13886900)
Sandie M. Degnan (7905290)

September 2022

Additional file 4. Output from TargetP-2.0 analysis predicting presence of signal peptide target reg...

Additional file 10: of Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

Yue Jiang (102705)
Xuejian Xiong (105663)
Jayne Danska (623569)
John Parkinson (4087)

January 2016

Detailed views of taxonomic contributions to specific components of the glycolysis/gluconeogenesis p...

Additional file 4 of Global diversity and distribution of prophages are lineage-specific within the Ralstonia solanacearum species complex

Samuel T. E. Greenrod (13912915)
Martina Stoycheva (13912918)
John Elphinstone (13912921)
Ville-Petri Friman (140973)

October 2022

Additional file 4: Table S3. Predicted functions of known proteins using structure-based annotation ...

Additional file 1: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

Rajas Rao (3530705)
Shaik Pasha (3470057)
Ramanathan Sowdhamini (5068)

September 2016

Table containing Number of hits obtained from each sequence searches and phylum-wise distribution of...

Additional file 3: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

Rajas Rao (3530705)
Shaik Pasha (3470057)
Ramanathan Sowdhamini (5068)

September 2016

Table showing Gene-synteny information of LuxS genes of different species. (XLSX 41 kb

RedoxiBase: A database for ROS homeostasis regulated proteins

Savelli, Bruno
Li, Qiang
Webber, Mark
Jemmat, Achraf Mohamed
Robitaille, Alexis
Zamocky, Marcel
Mathé, Catherine
Dunand, Christophe

September 2019

International audienceWe present a new database, specifically devoted to ROS homeostasis regulated p...

Additional file 3: Table S3. of Genomic analysis of Luteimonas abyssi XH031T: insights into its adaption to the subseafloor environment of South Pacific Gyre and ecological role in biogeochemical cycle

Li Zhang (8200)
Xiaolei Wang (139592)
Min Yu (120607)
Yanlu Qiao (3484571)
Xiao-Hua Zhang (87629)

December 2015

The predicted genes to be involved in the general metabolism of Luteimonas abyssi XH031T. (DOC 108 k...

Additional file 10: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

Rajas Rao (3530705)
Shaik Pasha (3470057)
Ramanathan Sowdhamini (5068)

September 2016

Homology models of LuxS of representatives from the clusters and Ramachandran plots of homology mode...

Additional file 3 of Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes

Gulden Olgun (5718848)
Ozgur Sahin (4777050)
Oznur Tastan (5718860)

September 2018

List of mRNAs participating in sponge interactions and their distribution over subtypes. (XLSX 70 kb

Additional file 1: Figure S1. of Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059

Marvin Dörries (3458153)
Lars Wöhlbrand (2556817)
Michael Kube (41124)
Richard Reinhardt (41125)
Ralf Rabus (2556805)

November 2016

Distribution of the 1,307 detected proteins by 2D DIGE, whole cell shotgun analysis and preparation ...

CCSSL_PhD_Thesis_Chapter_4_Supplementary_Tables

Catarina

June 2023

Supplementary Tables for Chapter 4 "Diversity and distribution of biosynthetic gene clusters related...

Diversity of Natural Product Biosynthetic Genes in the Microbiome of the Deep Sea Sponges Inflatella pellicula, Poecillastra compressa, and Stelletta normani

Borchert, E.
Jackson, S.
O'Gara, Fergal
Dobson, A.

January 2016

Three different deep sea sponge species, Inflatella pellicula, Poecillastra compressa, and Stelletta...

Additional file 10 of Evolution of mechanisms controlling epithelial morphogenesis across animals: new insights from dissociation-reaggregation experiments in the sponge Oscarella lobularis

Amélie Vernale (11310258)
Maria Mandela Prünster (11310261)
Fabio Marchianò (11310264)
Henry Debost (11310267)
Nicolas Brouilly (11310270)
Caroline Rocher (235350)
Dominique Massey-Harroche (11310273)
Emmanuelle Renard (235348)
André Le Bivic (493807)
Bianca H. Habermann (11310276)
Carole Borchiellini (11310279)

August 2021

Additional file 10: Table S7. Phylostratigraphy analysis. (A) Transcriptomes and Proteomes used in P...

Additional file 2 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Olivia H. Hewitt (13886900)
Sandie M. Degnan (7905290)

September 2022

Additional file 2. Table displaying total number of sequences identified within the genomes of each ...

Additional file 1 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Olivia H. Hewitt (13886900)
Sandie M. Degnan (7905290)

September 2022

Additional file 1: Table S1. Details and availability of the 19 metazoan genomes used in this study....

Additional file 4 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Olivia H. Hewitt (13886900)
Sandie M. Degnan (7905290)

September 2022

Additional file 4. Output from TargetP-2.0 analysis predicting presence of signal peptide target reg...

Additional file 10: of Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

Yue Jiang (102705)
Xuejian Xiong (105663)
Jayne Danska (623569)
John Parkinson (4087)

January 2016

Detailed views of taxonomic contributions to specific components of the glycolysis/gluconeogenesis p...

Additional file 4 of Global diversity and distribution of prophages are lineage-specific within the Ralstonia solanacearum species complex

Samuel T. E. Greenrod (13912915)
Martina Stoycheva (13912918)
John Elphinstone (13912921)
Ville-Petri Friman (140973)

October 2022

Additional file 4: Table S3. Predicted functions of known proteins using structure-based annotation ...

Additional file 1: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

Rajas Rao (3530705)
Shaik Pasha (3470057)
Ramanathan Sowdhamini (5068)

September 2016

Table containing Number of hits obtained from each sequence searches and phylum-wise distribution of...

Additional file 3: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

Rajas Rao (3530705)
Shaik Pasha (3470057)
Ramanathan Sowdhamini (5068)

September 2016

Table showing Gene-synteny information of LuxS genes of different species. (XLSX 41 kb

RedoxiBase: A database for ROS homeostasis regulated proteins

Savelli, Bruno
Li, Qiang
Webber, Mark
Jemmat, Achraf Mohamed
Robitaille, Alexis
Zamocky, Marcel
Mathé, Catherine
Dunand, Christophe

September 2019

International audienceWe present a new database, specifically devoted to ROS homeostasis regulated p...

Additional file 3: Table S3. of Genomic analysis of Luteimonas abyssi XH031T: insights into its adaption to the subseafloor environment of South Pacific Gyre and ecological role in biogeochemical cycle

Li Zhang (8200)
Xiaolei Wang (139592)
Min Yu (120607)
Yanlu Qiao (3484571)
Xiao-Hua Zhang (87629)

December 2015

The predicted genes to be involved in the general metabolism of Luteimonas abyssi XH031T. (DOC 108 k...

Additional file 10: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

Rajas Rao (3530705)
Shaik Pasha (3470057)
Ramanathan Sowdhamini (5068)

September 2016

Homology models of LuxS of representatives from the clusters and Ramachandran plots of homology mode...

Additional file 3 of Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes

Gulden Olgun (5718848)
Ozgur Sahin (4777050)
Oznur Tastan (5718860)

September 2018

List of mRNAs participating in sponge interactions and their distribution over subtypes. (XLSX 70 kb

Additional file 1: Figure S1. of Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059

Marvin Dörries (3458153)
Lars Wöhlbrand (2556817)
Michael Kube (41124)
Richard Reinhardt (41125)
Ralf Rabus (2556805)

November 2016

Distribution of the 1,307 detected proteins by 2D DIGE, whole cell shotgun analysis and preparation ...

CCSSL_PhD_Thesis_Chapter_4_Supplementary_Tables

Catarina

June 2023

Supplementary Tables for Chapter 4 "Diversity and distribution of biosynthetic gene clusters related...

Diversity of Natural Product Biosynthetic Genes in the Microbiome of the Deep Sea Sponges Inflatella pellicula, Poecillastra compressa, and Stelletta normani

Borchert, E.
Jackson, S.
O'Gara, Fergal
Dobson, A.

January 2016

Three different deep sea sponge species, Inflatella pellicula, Poecillastra compressa, and Stelletta...

Additional file 10 of Evolution of mechanisms controlling epithelial morphogenesis across animals: new insights from dissociation-reaggregation experiments in the sponge Oscarella lobularis

Amélie Vernale (11310258)
Maria Mandela Prünster (11310261)
Fabio Marchianò (11310264)
Henry Debost (11310267)
Nicolas Brouilly (11310270)
Caroline Rocher (235350)
Dominique Massey-Harroche (11310273)
Emmanuelle Renard (235348)
André Le Bivic (493807)
Bianca H. Habermann (11310276)
Carole Borchiellini (11310279)

August 2021

Additional file 10: Table S7. Phylostratigraphy analysis. (A) Transcriptomes and Proteomes used in P...

Additional file 3 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Abstract

Extracted data

Additional file 3 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

Abstract

Extracted data

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