Additional file 6 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

A Comparative Analysis of Industrial Escherichia coli K–12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Karoline Marisch (443196)
Karl Bayer (443197)
Theresa Scharl (117543)
Juergen Mairhofer (443198)
Peter M. Krempl (443199)
Karin Hummel (443200)
Ebrahim Razzazi-Fazeli (414609)
Gerald Striedner (443201)

August 2013

<div>Escherichia coli K–12 and B strains are among the most frequently used bacterial host...

A Comparative Analysis of Industrial Escherichia coli K– 12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Karoline Marisch
Karl Bayer
Theresa Scharl
Juergen Mairhofer
Peter M. Krempl
Karin Hummel
Ebrahim Razzazi-fazeli
Gerald Striedner

August 2016

Escherichia coli K–12 and B strains are among the most frequently used bacterial hosts for productio...

Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression

Borirak, O.
Rolfe, M.D.
de Koning, L.J.
Hoefsloot, H.C.J.
Bekker, M.
Dekker, H.L.
Roseboom, W.
Green, J.
de Koster, C.G.
Hellingwerf, K.J.

January 2015

Time-series transcript- and protein-profiles were measured upon initiation of carbon catabolite repr...

Additional file 5 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 5: Supplementary table 3 List of differentially expressed genes when performing pair...

Additional file 4 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 4: Supplementary table 2 List of differentially expressed genes when comparing the t...

Additional file 7 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 7: Supplementary table 5 List of genes displaying a negative correlation of express...

Additional file 1 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 1: Figure S1 Growth kinetics of strains W3110, WG, WGM, WGMC, and WHIC. Glucose conc...

Additional file 2 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 2: Figure S2 Venn diagram representing the number of unique and overlapping genes am...

Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Fragoso-Jiménez, J.C.
Gutierrez-Rios, R.M.
Flores, N.
Martinez, A.
Lara, A.R.
Delvigne, Frank
Gosset, G.

January 2022

peer reviewedBACKGROUND: The modification of glucose import capacity is an engineering strategy that...

A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level.

Karoline Marisch
Karl Bayer
Theresa Scharl
Juergen Mairhofer
Peter M Krempl
Karin Hummel
Ebrahim Razzazi-Fazeli
Gerald Striedner

Escherichia coli K-12 and B strains are among the most frequently used bacterial hosts for productio...

Transcriptome Analysis Reveals Potential Mechanisms of L-Serine Production by Escherichia coli Fermentation in Different Carbon–Nitrogen Ratio Medium

Zheng Chen
Xiaojia Chen
Qinyu Li
Peng Zhou
Zhijun Zhao
Baoguo Li

July 2022

L-serine is an industrially valuable amino acid that is widely used in the food, cosmetics and pharm...

Additional file 6: of Transcriptome profiling analysis reveals metabolic changes across various growth phases in Bacillus pumilus BA06

Lin-Li Han (4238845)
Huan-Huan Shao (4238836)
Yong-Cheng Liu (4238839)
Gang Liu (81776)
Chao-Ying Xie (4238842)
Xiao-Jie Cheng (548541)
Hai-Yan Wang (168261)
Xue-Mei Tan (532268)
Hong Feng (2695462)

July 2017

List of the differentially expressed genes assigned to protein secretion systems by KEGG analysis. (...

MOESM4 of Deletion of the 2-acyl-glycerophosphoethanolamine cycle improve glucose metabolism in Escherichia coli strains employed for overproduction of aromatic compounds

César Aguilar (3253065)
Noemí Flores (82123)
Fernando Riveros-McKay (3445733)
Diana Sahonero-Canavesi (3445730)
Susy Carmona (3445739)
Otto Geiger (2180836)
Adelfo Escalante (87478)
Francisco Bolívar (3445736)

December 2015

Additional file 4: Table S3. RT-qPCR mRNA expression values of central carbon metabolism, in the evo...

Additional file 6 of FlexFlux: combining metabolic flux and regulatory network analyses

Lucas Marmiesse (3211743)
RĂŠmi Peyraud (3528209)
Ludovic Cottret (190506)

December 2015

Results of the analysis of the lactose and maltose operon of E. coli . (PDF 132 kb

MOESM5 of A particular silent codon exchange in a recombinant gene greatly influences host cell metabolic activity

Natalie Rahmen (3496205)
Christian Schlupp (3496196)
Hitoshi Mitsunaga (3496214)
Alexander Fulton (2579620)
Tita Aryani (3496211)
Lara Esch (3496199)
Ulrich Schaffrath (3496208)
Eiichiro Fukuzaki (3496202)
Karl-Erich Jaeger (125594)
Jochen Büchs (3437060)

October 2015

Additional file 5. Product formation and sum of relative transcript abundances of four E. coli BL21(...

A Comparative Analysis of Industrial Escherichia coli K–12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Karoline Marisch (443196)
Karl Bayer (443197)
Theresa Scharl (117543)
Juergen Mairhofer (443198)
Peter M. Krempl (443199)
Karin Hummel (443200)
Ebrahim Razzazi-Fazeli (414609)
Gerald Striedner (443201)

August 2013

<div>Escherichia coli K–12 and B strains are among the most frequently used bacterial host...

A Comparative Analysis of Industrial Escherichia coli K– 12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Karoline Marisch
Karl Bayer
Theresa Scharl
Juergen Mairhofer
Peter M. Krempl
Karin Hummel
Ebrahim Razzazi-fazeli
Gerald Striedner

August 2016

Escherichia coli K–12 and B strains are among the most frequently used bacterial hosts for productio...

Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression

Borirak, O.
Rolfe, M.D.
de Koning, L.J.
Hoefsloot, H.C.J.
Bekker, M.
Dekker, H.L.
Roseboom, W.
Green, J.
de Koster, C.G.
Hellingwerf, K.J.

January 2015

Time-series transcript- and protein-profiles were measured upon initiation of carbon catabolite repr...

Additional file 5 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 5: Supplementary table 3 List of differentially expressed genes when performing pair...

Additional file 4 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 4: Supplementary table 2 List of differentially expressed genes when comparing the t...

Additional file 7 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 7: Supplementary table 5 List of genes displaying a negative correlation of express...

Additional file 1 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 1: Figure S1 Growth kinetics of strains W3110, WG, WGM, WGMC, and WHIC. Glucose conc...

Additional file 2 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Juan Carlos Fragoso-Jiménez (13129363)
Rosa María Gutierrez-Rios (9227003)
Noemí Flores (82123)
Alfredo Martinez (92371)
Alvaro R. Lara (3213945)
Frank Delvigne (3432185)
Guillermo Gosset (74562)

September 2022

Additional file 2: Figure S2 Venn diagram representing the number of unique and overlapping genes am...

Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Fragoso-Jiménez, J.C.
Gutierrez-Rios, R.M.
Flores, N.
Martinez, A.
Lara, A.R.
Delvigne, Frank
Gosset, G.

January 2022

peer reviewedBACKGROUND: The modification of glucose import capacity is an engineering strategy that...

A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level.

Karoline Marisch
Karl Bayer
Theresa Scharl
Juergen Mairhofer
Peter M Krempl
Karin Hummel
Ebrahim Razzazi-Fazeli
Gerald Striedner

Escherichia coli K-12 and B strains are among the most frequently used bacterial hosts for productio...

Transcriptome Analysis Reveals Potential Mechanisms of L-Serine Production by Escherichia coli Fermentation in Different Carbon–Nitrogen Ratio Medium

Zheng Chen
Xiaojia Chen
Qinyu Li
Peng Zhou
Zhijun Zhao
Baoguo Li

July 2022

L-serine is an industrially valuable amino acid that is widely used in the food, cosmetics and pharm...

Additional file 6: of Transcriptome profiling analysis reveals metabolic changes across various growth phases in Bacillus pumilus BA06

Lin-Li Han (4238845)
Huan-Huan Shao (4238836)
Yong-Cheng Liu (4238839)
Gang Liu (81776)
Chao-Ying Xie (4238842)
Xiao-Jie Cheng (548541)
Hai-Yan Wang (168261)
Xue-Mei Tan (532268)
Hong Feng (2695462)

July 2017

List of the differentially expressed genes assigned to protein secretion systems by KEGG analysis. (...

MOESM4 of Deletion of the 2-acyl-glycerophosphoethanolamine cycle improve glucose metabolism in Escherichia coli strains employed for overproduction of aromatic compounds

César Aguilar (3253065)
Noemí Flores (82123)
Fernando Riveros-McKay (3445733)
Diana Sahonero-Canavesi (3445730)
Susy Carmona (3445739)
Otto Geiger (2180836)
Adelfo Escalante (87478)
Francisco Bolívar (3445736)

December 2015

Additional file 4: Table S3. RT-qPCR mRNA expression values of central carbon metabolism, in the evo...

Additional file 6 of FlexFlux: combining metabolic flux and regulatory network analyses

Lucas Marmiesse (3211743)
RĂŠmi Peyraud (3528209)
Ludovic Cottret (190506)

December 2015

Results of the analysis of the lactose and maltose operon of E. coli . (PDF 132 kb

MOESM5 of A particular silent codon exchange in a recombinant gene greatly influences host cell metabolic activity

Natalie Rahmen (3496205)
Christian Schlupp (3496196)
Hitoshi Mitsunaga (3496214)
Alexander Fulton (2579620)
Tita Aryani (3496211)
Lara Esch (3496199)
Ulrich Schaffrath (3496208)
Eiichiro Fukuzaki (3496202)
Karl-Erich Jaeger (125594)
Jochen Büchs (3437060)

October 2015

Additional file 5. Product formation and sum of relative transcript abundances of four E. coli BL21(...

A Comparative Analysis of Industrial Escherichia coli K–12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Karoline Marisch (443196)
Karl Bayer (443197)
Theresa Scharl (117543)
Juergen Mairhofer (443198)
Peter M. Krempl (443199)
Karin Hummel (443200)
Ebrahim Razzazi-Fazeli (414609)
Gerald Striedner (443201)

August 2013

<div>Escherichia coli K–12 and B strains are among the most frequently used bacterial host...

A Comparative Analysis of Industrial Escherichia coli K– 12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Karoline Marisch
Karl Bayer
Theresa Scharl
Juergen Mairhofer
Peter M. Krempl
Karin Hummel
Ebrahim Razzazi-fazeli
Gerald Striedner

August 2016

Escherichia coli K–12 and B strains are among the most frequently used bacterial hosts for productio...

Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression

Borirak, O.
Rolfe, M.D.
de Koning, L.J.
Hoefsloot, H.C.J.
Bekker, M.
Dekker, H.L.
Roseboom, W.
Green, J.
de Koster, C.G.
Hellingwerf, K.J.

January 2015

Time-series transcript- and protein-profiles were measured upon initiation of carbon catabolite repr...

Additional file 6 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Abstract

Extracted data

Additional file 6 of Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories

Abstract

Extracted data

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