Additional file 2 of Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo

Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Sigalova, Olga M.
Chaplin, Andrei V
Bochkareva, Olga
Shelyakin, Pavel V.
Filaretov, Vsevolod A.
Akkuratov, Evgeny E.
Burskaia, Valentina
Gelfand, Mikhail S.

January 2019

Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb

Additional file 6: of Virulence-related comparative transcriptomics of infectious and non-infectious chlamydial particles

Thomas Beder (5581283)
Hans Saluz (5581286)

August 2018

Table S5. The expression of species-specific genes of C. psittaci, C. abortus and W. chondrophila is...

Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum

Bachmann, Nathan L
Fraser, Tamieka A
Bertelli, Claire
Jelocnik, Martina
Gillett, Amber
Funnell, Oliver
Flanagan, Cheyne
Myers, Garry S A
Timms, Peter
Polkinghorne, Adam

August 2014

Background\ud \ud Chlamydia pecorum is an important pathogen of domesticated livestock including she...

Additional file 1 of Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo

Sara Rigamonti (13770518)
Anna Maria Floriano (13770521)
Erika Scaltriti (5370857)
David Longbottom (122043)
Morag Livingstone (122027)
Francesco Comandatore (560736)
Stefano Pongolini (3709228)
Lorenzo Capucci (47158)
Maria Lucia Mandola (5687702)
Moira Bazzucchi (13770524)
Paola Prati (767726)
Nadia Vicari (389741)

September 2022

Additional file 1: Figure S1. Circular representation of the chromosome of the plasmid of C. pecorum...

Additional file 1: Table S1. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

C. pecorum L1 plasmid sequence identity comparisons based on discontiguous megaBLAST hits. (PDF 338Â...

Additional file 6: Table S4. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

C. pecorum isolates and clinical samples Additional file 4: Table S3 and Additional file 6: Table S4...

Additional file 4: Table S3. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

Characteristics of the polymorphic chromosomal genes under positive selection analysed in the presen...

Additional file 5: Figure S2. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

Bayesian phylogenetic analyses of the cytotoxin genes from the subset of 12 porcine, sheep, cattle, ...

Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

Sait, Michelle
Livingstone, Morag
Clark, Ewan M
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, Frederick A
Myers, Garry S A
Longbottom, David

January 2014

BACKGROUND: Chlamydia pecorum is the causative agent of a number of acute diseases, but most often c...

Data from: Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

Sait, Michelle
Livingstone, Morag
Clark, Ewan M.
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, F. Alex
Myers, Garry S. A.
Longbottom, David

Background: Chlamydia pecorum is the causative agent of a number of acute diseases, but most often c...

Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Sigalova, Olga M.
Chaplin, Andrei V.
Bochkareva, Olga
Shelyakin, Pavel V.
Filaretov, Vsevolod A.
Akkuratov, Evgeny E.
Burskaia, Valentina
Gelfand, Mikhail S.

January 2019

Summary of orthologous groups (OGs) for 227 genomes of genus Chlamydia. (CSV 362 kb

Additional file 6: Table S6. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Weina Guo (632469)
Martina Jelocnik (3581909)
Jing Li (10611)
Konrad Sachse (44348)
Adam Polkinghorne (81145)
Yvonne Pannekoek (191686)
Bernhard Kaltenboeck (288473)
Jiansen Gong (471663)
Jinfeng You (4668100)
Chengming Wang (288475)

December 2017

Original data for T3SS of C. gallinacea, including the locus-tags, and their annotation/putative fun...

Additional file 1: of European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

H. Seth-Smith (4004624)
Leonor Busó (4004651)
M. Livingstone (4004633)
M. Sait (4004627)
S. Harris (4004639)
K. Aitchison (4004642)
Evangelia Vretou (81140)
V. Siarkou (4004636)
K. Laroucau (4004618)
K. Sachse (4004621)
D. Longbottom (4004630)
N. Thomson (4004645)

May 2017

Isolates analysed in this study including source, sequence depth and MLVA and MLST sequence types. *...

Additional file 1: Table S1. of Co-circulation of different A. phagocytophilum variants within cattle herds and possible reservoir role for cattle

Anne-Claire Lagrée (3544490)
Clotilde Rouxel (4928038)
Maëllys Kevin (4928035)
Thibaud Dugat (3544499)
Guillaume Girault (789370)
Benoît Durand (142673)
Martin Pfeffer (331042)
Cornelia Silaghi (546842)
Marion Nieder (4745727)
Henri-Jean Boulouis (37680)
Nadia Haddad (309461)

March 2018

DNA samples from Chastagner et al. [9] used for the alignments. The available sequences for each loc...

Additional file 5: Table S5. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Weina Guo (632469)
Martina Jelocnik (3581909)
Jing Li (10611)
Konrad Sachse (44348)
Adam Polkinghorne (81145)
Yvonne Pannekoek (191686)
Bernhard Kaltenboeck (288473)
Jiansen Gong (471663)
Jinfeng You (4668100)
Chengming Wang (288475)

December 2017

Original data for MLST analysis of the C. gallinacea-positive samples. (XLSX 10Â kb

Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Sigalova, Olga M.
Chaplin, Andrei V
Bochkareva, Olga
Shelyakin, Pavel V.
Filaretov, Vsevolod A.
Akkuratov, Evgeny E.
Burskaia, Valentina
Gelfand, Mikhail S.

January 2019

Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb

Additional file 6: of Virulence-related comparative transcriptomics of infectious and non-infectious chlamydial particles

Thomas Beder (5581283)
Hans Saluz (5581286)

August 2018

Table S5. The expression of species-specific genes of C. psittaci, C. abortus and W. chondrophila is...

Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum

Bachmann, Nathan L
Fraser, Tamieka A
Bertelli, Claire
Jelocnik, Martina
Gillett, Amber
Funnell, Oliver
Flanagan, Cheyne
Myers, Garry S A
Timms, Peter
Polkinghorne, Adam

August 2014

Background\ud \ud Chlamydia pecorum is an important pathogen of domesticated livestock including she...

Additional file 1 of Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo

Sara Rigamonti (13770518)
Anna Maria Floriano (13770521)
Erika Scaltriti (5370857)
David Longbottom (122043)
Morag Livingstone (122027)
Francesco Comandatore (560736)
Stefano Pongolini (3709228)
Lorenzo Capucci (47158)
Maria Lucia Mandola (5687702)
Moira Bazzucchi (13770524)
Paola Prati (767726)
Nadia Vicari (389741)

September 2022

Additional file 1: Figure S1. Circular representation of the chromosome of the plasmid of C. pecorum...

Additional file 1: Table S1. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

C. pecorum L1 plasmid sequence identity comparisons based on discontiguous megaBLAST hits. (PDF 338Â...

Additional file 6: Table S4. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

C. pecorum isolates and clinical samples Additional file 4: Table S3 and Additional file 6: Table S4...

Additional file 4: Table S3. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

Characteristics of the polymorphic chromosomal genes under positive selection analysed in the presen...

Additional file 5: Figure S2. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik (3581909)
Nathan Bachmann (198737)
Bernhard Kaltenboeck (288473)
Courtney Waugh (845322)
Lucy Woolford (3581903)
K. Speight (3581906)
Amber Gillett (3098235)
Damien Higgins (767278)
Cheyne Flanagan (3581900)
Garry Myers (377052)
Peter Timms (206543)
Adam Polkinghorne (81145)

November 2015

Bayesian phylogenetic analyses of the cytotoxin genes from the subset of 12 porcine, sheep, cattle, ...

Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

Sait, Michelle
Livingstone, Morag
Clark, Ewan M
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, Frederick A
Myers, Garry S A
Longbottom, David

January 2014

BACKGROUND: Chlamydia pecorum is the causative agent of a number of acute diseases, but most often c...

Data from: Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

Sait, Michelle
Livingstone, Morag
Clark, Ewan M.
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, F. Alex
Myers, Garry S. A.
Longbottom, David

Background: Chlamydia pecorum is the causative agent of a number of acute diseases, but most often c...

Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Sigalova, Olga M.
Chaplin, Andrei V.
Bochkareva, Olga
Shelyakin, Pavel V.
Filaretov, Vsevolod A.
Akkuratov, Evgeny E.
Burskaia, Valentina
Gelfand, Mikhail S.

January 2019

Summary of orthologous groups (OGs) for 227 genomes of genus Chlamydia. (CSV 362 kb

Additional file 6: Table S6. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Weina Guo (632469)
Martina Jelocnik (3581909)
Jing Li (10611)
Konrad Sachse (44348)
Adam Polkinghorne (81145)
Yvonne Pannekoek (191686)
Bernhard Kaltenboeck (288473)
Jiansen Gong (471663)
Jinfeng You (4668100)
Chengming Wang (288475)

December 2017

Original data for T3SS of C. gallinacea, including the locus-tags, and their annotation/putative fun...

Additional file 1: of European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

H. Seth-Smith (4004624)
Leonor Busó (4004651)
M. Livingstone (4004633)
M. Sait (4004627)
S. Harris (4004639)
K. Aitchison (4004642)
Evangelia Vretou (81140)
V. Siarkou (4004636)
K. Laroucau (4004618)
K. Sachse (4004621)
D. Longbottom (4004630)
N. Thomson (4004645)

May 2017

Isolates analysed in this study including source, sequence depth and MLVA and MLST sequence types. *...

Additional file 1: Table S1. of Co-circulation of different A. phagocytophilum variants within cattle herds and possible reservoir role for cattle

Anne-Claire Lagrée (3544490)
Clotilde Rouxel (4928038)
Maëllys Kevin (4928035)
Thibaud Dugat (3544499)
Guillaume Girault (789370)
Benoît Durand (142673)
Martin Pfeffer (331042)
Cornelia Silaghi (546842)
Marion Nieder (4745727)
Henri-Jean Boulouis (37680)
Nadia Haddad (309461)

March 2018

DNA samples from Chastagner et al. [9] used for the alignments. The available sequences for each loc...

Additional file 5: Table S5. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Weina Guo (632469)
Martina Jelocnik (3581909)
Jing Li (10611)
Konrad Sachse (44348)
Adam Polkinghorne (81145)
Yvonne Pannekoek (191686)
Bernhard Kaltenboeck (288473)
Jiansen Gong (471663)
Jinfeng You (4668100)
Chengming Wang (288475)

December 2017

Original data for MLST analysis of the C. gallinacea-positive samples. (XLSX 10Â kb

Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Sigalova, Olga M.
Chaplin, Andrei V
Bochkareva, Olga
Shelyakin, Pavel V.
Filaretov, Vsevolod A.
Akkuratov, Evgeny E.
Burskaia, Valentina
Gelfand, Mikhail S.

January 2019

Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb

Additional file 6: of Virulence-related comparative transcriptomics of infectious and non-infectious chlamydial particles

Thomas Beder (5581283)
Hans Saluz (5581286)

August 2018

Table S5. The expression of species-specific genes of C. psittaci, C. abortus and W. chondrophila is...

Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum

Bachmann, Nathan L
Fraser, Tamieka A
Bertelli, Claire
Jelocnik, Martina
Gillett, Amber
Funnell, Oliver
Flanagan, Cheyne
Myers, Garry S A
Timms, Peter
Polkinghorne, Adam

August 2014

Background\ud \ud Chlamydia pecorum is an important pathogen of domesticated livestock including she...

Additional file 2 of Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo

Abstract

Extracted data

Additional file 2 of Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo

Abstract

Extracted data

Topics

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