Minor allele frequency (MAF) csv file and Phyloscanner PatStats.csv used to develop the HIV-phyloTSI model (PANGEA and BEEHIVE data). Part of project: "HIV-phyloTSI: Subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data" by Golubchik T, et al. (2022) https://doi.org/10.1101/2022.05.15.22275117 </p
Supporting data for a PLOS ONE paper titled "Evaluation of multi-assay algorithms for identifying in...
<p><b>Copyright information:</b></p><p>Taken from "Phenotype and envelope gene diversity of -deleted...
HIV evolves rapidly within individuals, allowing phylogenetic studies to infer histories of viral li...
Estimating the time since HIV infection (TSI) at population level is essential for tracking changes ...
<p>A) Maximum clade credibility tree with time scale obtained from the strict molecular clock. Time ...
<p>The Malaysian MSM sequences (35 subtype B and 35 CRF01_AE) along with respective reference sequen...
Accurate classification of HIV-1 group M lineages, henceforth referred to as subtyping, is essential...
BACKGROUND:The occurrence of a genetic bottleneck in HIV sexual or mother-to-infant transmission has...
<p><b>Copyright information:</b></p><p>Taken from "Phenotype and envelope gene diversity of -deleted...
<p>A total of 57 near full-length genome sequences were used for the analysis. Among them, 16 A1a (r...
Washington, DC is experiencing a generalized HIV-1 epidemic, defined by the World Health Organizatio...
<p><b>A) Maximum clade credibility tree with time scale obtained from the strict molecular clock.</b...
<p>Bayesian Skyline plot, based on a ‘relaxed clock’ coalescent framework analysis, was constructed ...
<p>Subtype C reference sequences from different countries are marked with green filled circle. Cohor...
Massively parallel sequencing (MPS) technologies, such as 454-pyrosequencing, allow for the identifi...
Supporting data for a PLOS ONE paper titled "Evaluation of multi-assay algorithms for identifying in...
<p><b>Copyright information:</b></p><p>Taken from "Phenotype and envelope gene diversity of -deleted...
HIV evolves rapidly within individuals, allowing phylogenetic studies to infer histories of viral li...
Estimating the time since HIV infection (TSI) at population level is essential for tracking changes ...
<p>A) Maximum clade credibility tree with time scale obtained from the strict molecular clock. Time ...
<p>The Malaysian MSM sequences (35 subtype B and 35 CRF01_AE) along with respective reference sequen...
Accurate classification of HIV-1 group M lineages, henceforth referred to as subtyping, is essential...
BACKGROUND:The occurrence of a genetic bottleneck in HIV sexual or mother-to-infant transmission has...
<p><b>Copyright information:</b></p><p>Taken from "Phenotype and envelope gene diversity of -deleted...
<p>A total of 57 near full-length genome sequences were used for the analysis. Among them, 16 A1a (r...
Washington, DC is experiencing a generalized HIV-1 epidemic, defined by the World Health Organizatio...
<p><b>A) Maximum clade credibility tree with time scale obtained from the strict molecular clock.</b...
<p>Bayesian Skyline plot, based on a ‘relaxed clock’ coalescent framework analysis, was constructed ...
<p>Subtype C reference sequences from different countries are marked with green filled circle. Cohor...
Massively parallel sequencing (MPS) technologies, such as 454-pyrosequencing, allow for the identifi...
Supporting data for a PLOS ONE paper titled "Evaluation of multi-assay algorithms for identifying in...
<p><b>Copyright information:</b></p><p>Taken from "Phenotype and envelope gene diversity of -deleted...
HIV evolves rapidly within individuals, allowing phylogenetic studies to infer histories of viral li...
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