© 2022, The Author(s), under exclusive licence to Springer Nature Switzerland AG.The notion of linear K-system was introduced by the present authors as an abstract model arising from the structure of compactified moduli spaces of solutions to Floer’s equation in the book (Fukaya et al. in Springer monographs in mathematics, Springer, Berlin, 2020). The purpose of the present article is to provide a geometric realization of the linear K-system associated with solutions to Floer’s equation in the Morse–Bott setting. Immediate consequences [when combined with the abstract theory from Fukaya et al. (Springer monographs in mathematics, Springer, Berlin, 2020)] are the construction of Floer cohomology for periodic Hamiltonian systems on general c...