Supplementary information for Phylogenomic perspectives on evolutionary history: examples from the flowering plant lineage Ericales

http://deepblue.lib.umich.edu/bitstream/2027.42/171762/1/AppendixA-Table1.xlsxhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/2/AppendixA-Table2.xlsxhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/3/AppendixA-Table3.xlsxhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/4/AppendixA-Table4.xlsxhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/5/AppendixA-Table5.xlsxhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/6/AppendixB-Figure5.htmlhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/7/AppendixB-Tables1-6.xlsxhttp://deepblue.lib.umich.edu/bitstream/2027.42/171762/8/AppendixC-Table1.docxDescription of AppendixA-Table1.xlsx : AppendixA-Table1. The origins of transcriptome assemblies, reference genomes, and raw reads used in homolog clustering.Description of AppendixA-Table2.xlsx : AppendixA-Table2. Results of unguided, regular bootstrapping with the 387 ortholog supermatrix in RAxML.Description of AppendixA-Table3.xlsx : AppendixA-Table3. Log-likelihood penalties incurred by constraining contentious edges.Description of AppendixA-Table4.xlsx : AppendixA-Table4. Phyckle results regarding the placement of Ebenaceae for the 387 ortholog data set.Description of AppendixA-Table5.xlsx : AppendixA-Table5. Phyckle results regarding the placement of Ebenaceae for the 2045 ortholog data set.Description of AppendixB-Figure5.html : AppendixB-Figure5. Evidence of geographic structure among individuals of E. coriacea.Description of AppendixB-Tables1-6.xlsx : AppendixB-Tables1-6. Voucher and accession information for samples used in the study. Summary statistics for all SNP datasets. Summary of all rooted triplet tests conducted. Results of tree searches and likelihood calculations for the Parvifolia phylogenies. Morphological and ecological traits of species inferred to engage in admixture. Information for specimens with flowers or flower buds at NY.Description of AppendixC-Table1.docx : AppendixC-Table1. Accession information for samples used in this study.SEL