Comparisons of whole genomes can yield important insights into the evolution of genome structure, such as the role of inversions in bacterial evolution and the identification of large-scale duplications in the human genome. This unit briefly compares two tools for aligning whole genome sequences: MUMmer and PipMaker. These tools differ in both the underlying algorithms used, and in the interface they present to the user
Although the phylogenetic relationships of many organisms have been convincingly resolved by the com...
The output of sequence data from worldwide sequencing centers has been rising at an exponential rate...
The technologies for sequencing genetic materials have improved vastly during the last fifteen years...
The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evol...
The availability of the assembled mouse genome makes possible, for the first time, an alignment and...
International audienceBackgroundIn recent years, many studies focused on the description and compari...
International audienceWe compare complete genomes from common words denoted MUMs for maximum unique ...
Motivation: Standard genome sequence alignment tools primarily designed to find one alignment per re...
AbstractWe compare complete genomes from common words denoted MUMs for maximum unique matches. They ...
This paper describes a framework and a high-level language toolkit for comparative analysis of genom...
Multiple sequence alignment (MSA) is the heart of comparative sequence analysis. Recent studies demo...
Alignment of long DNA sequences is a challenging task due to its high demands for computational powe...
Completely sequencing genomes is expensive, and to save costs we often analyze new genomic data in t...
Molecular biology is becoming a computationally intense realm of contemporary science and faces some...
Next generation sequencing technologies have the capability to provide large numbers of short reads ...
Although the phylogenetic relationships of many organisms have been convincingly resolved by the com...
The output of sequence data from worldwide sequencing centers has been rising at an exponential rate...
The technologies for sequencing genetic materials have improved vastly during the last fifteen years...
The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evol...
The availability of the assembled mouse genome makes possible, for the first time, an alignment and...
International audienceBackgroundIn recent years, many studies focused on the description and compari...
International audienceWe compare complete genomes from common words denoted MUMs for maximum unique ...
Motivation: Standard genome sequence alignment tools primarily designed to find one alignment per re...
AbstractWe compare complete genomes from common words denoted MUMs for maximum unique matches. They ...
This paper describes a framework and a high-level language toolkit for comparative analysis of genom...
Multiple sequence alignment (MSA) is the heart of comparative sequence analysis. Recent studies demo...
Alignment of long DNA sequences is a challenging task due to its high demands for computational powe...
Completely sequencing genomes is expensive, and to save costs we often analyze new genomic data in t...
Molecular biology is becoming a computationally intense realm of contemporary science and faces some...
Next generation sequencing technologies have the capability to provide large numbers of short reads ...
Although the phylogenetic relationships of many organisms have been convincingly resolved by the com...
The output of sequence data from worldwide sequencing centers has been rising at an exponential rate...
The technologies for sequencing genetic materials have improved vastly during the last fifteen years...
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